hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpj/mpj01106/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1341 ( 506 res) mpj01106 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RRM RNA recognition motif 172.1 5.5e-47 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RRM 1/2 110 183 .. 1 121 [] 89.7 3.4e-22 RRM 2/2 243 315 .. 1 121 [] 85.0 9.1e-21 Alignments of top-scoring domains: RRM: domain 1 of 2, from 110 to 183: score 89.7, E = 3.4e-22 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri ++f++N+ p+d++++ +++l ++k G+v++v + mKIAA1341 110 RVFISNI--PYDMKWQAIKDLM-------------REKVGEVTYVEL 141 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli ++d + Gks+G++ VeF+dee ++kA + mKIAA1341 142 FKDAE----------------------GKSRGCGVVEFKDEEFVKKA--L 167 ealnaskGkeledgGrptlglrVe<-* e +n +++l Grp l+++ mKIAA1341 168 ETMN---KYDL--SGRP---LNIK 183 RRM: domain 2 of 2, from 243 to 315: score 85.0, E = 9.1e-21 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri t+fV NL +++v ++ L+e+F s G+v++++i mKIAA1341 243 TIFVANL--DFKVGWKKLKEVF--------------SIAGTVKRADI 273 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli dkd Gks+G + V+Fe + +A +A i mKIAA1341 274 KEDKD----------------------GKSRGMGTVTFEQAIEAVQA--I 299 ealnaskGkeledgGrptlglrVe<-* +++n G+ l +rp ++V+ mKIAA1341 300 SMFN---GQFL--FDRP---MHVK 315 //