hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01106/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1341  ( 506 res)   mpj01106

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or    152.5    7.5e-42   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM_1      1/2     111   182 ..     1    74 []    84.4  2.4e-21
RRM_1      2/2     244   314 ..     1    74 []    69.2  8.8e-17

Alignments of top-scoring domains:
RRM_1: domain 1 of 2, from 111 to 182: score 84.4, E = 2.4e-21
                   *->lfVgNLppdtteedLkdlFsk.fGpiesikivrDttretgrskGfaF
                      +f++N+p+d+ ++ +kdl ++++G+++ +++++D   + g+s+G++ 
   mKIAA1341   111    VFISNIPYDMKWQAIKDLMREkVGEVTYVELFKD---AEGKSRGCGV 154  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   VeF+dee ++kAl+++n++ l gr+l +   
   mKIAA1341   155 VEFKDEEFVKKALETMNKYDLSGRPLNI    182  

RRM_1: domain 2 of 2, from 244 to 314: score 69.2, E = 8.8e-17
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fV NL + + +++Lk+ Fs  G +++++i+ D     g+s+G++ V
   mKIAA1341   244    IFVANLDFKVGWKKLKEVFSIAGTVKRADIKED---KDGKSRGMGTV 287  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe+  +A  A++  nG+ l +r+++v   
   mKIAA1341   288 TFEQAIEAVQAISMFNGQFLFDRPMHV    314  

//