hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm09346/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1340  ( 282 res)   mpm09346

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Kelch_1  Kelch motif                                    125.4      1e-33   4
Kelch_2  Kelch motif                                     36.9    4.5e-07   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Kelch_1    1/4      19    65 ..     1    45 []    37.6  2.8e-07
Kelch_2    1/3      19    65 ..     1    54 []    11.0        9
Kelch_1    2/4      67   108 ..     1    45 []    50.5  3.6e-11
Kelch_2    2/3      67   108 ..     1    54 []    19.0     0.11
Kelch_1    3/4     110   155 ..     1    45 []    23.4   0.0055
Kelch_2    3/3     110   155 ..     1    54 []     6.9       31
Kelch_1    4/4     157   212 ..     1    45 []    13.9     0.71

Alignments of top-scoring domains:
Kelch_1: domain 1 of 4, from 19 to 65: score 37.6, E = 2.8e-07
                   *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp
                        +g+g++ ld++++++GGy  ++q  + + +Y+p tn+W +++sm+
   mKIAA1340    19    NVRGYGSAILDNYLFIVGGYRItsQEISAAHSYNPITNEWLQVASMN 65   

                   <-*
                      
   mKIAA1340     -     -    

Kelch_2: domain 1 of 3, from 19 to 65: score 11.0, E = 9
                   *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW
                      +  +  s+ +++ l++vGG+        + +  +s  + ++p tn+W
   mKIAA1340    19    NVRGYGSAILDNYLFIVGGY-------RITSQEISAAHSYNPITNEW 58   

                   eklpalp<-*
                     ++++    
   mKIAA1340    59 LQVASMN    65   

Kelch_1: domain 2 of 4, from 67 to 108: score 50.5, E = 3.6e-11
                   *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<-
                      +Rs++  v+++ k+Y+iGG+    +++ve+Y+pe + W +++++p  
   mKIAA1340    67    KRSNFKLVAVNSKLYAIGGQA---VSNVECYNPEQDAWNFVAPLP   108  

                   *
                    
   mKIAA1340     -   -    

Kelch_2: domain 2 of 3, from 67 to 108: score 19.0, E = 0.11
                   *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW
                       r++  +v +++kly +GG             + s + +++pe  +W
   mKIAA1340    67    KRSNFKLVAVNSKLYAIGGQ------------AVSNVECYNPEQDAW 101  

                   eklpalp<-*
                     +++lp   
   mKIAA1340   102 NFVAPLP    108  

Kelch_1: domain 3 of 4, from 110 to 155: score 23.4, E = 0.0055
                   *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp<
                      p + ++++ ++gkiYviGGy+ + +  ++  Y p+ + Wt   +   
   mKIAA1340   110    PLAEFSACECKGKIYVIGGYTTrDRNMNILQYCPSADLWTLFETCD  155  

                   -*
                     
   mKIAA1340     -    -    

Kelch_2: domain 3 of 3, from 110 to 155: score 6.9, E = 31
                   *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW
                      p++  +++ + gk+yv+GG+           ++ + +l + p+   W
   mKIAA1340   110    PLAEFSACECKGKIYVIGGY--------TTRDRNMNILQYCPSADLW 148  

                   eklpalp<-*
                   +     +   
   mKIAA1340   149 TLFETCD    155  

Kelch_1: domain 4 of 4, from 157 to 212: score 13.9, E = 0.71
                   *->pRsgagvvvldgkiYviGGydg...........qslnsvevYDpetn
                      + +   +v+++  iY++GG+  + ++++++++++ + +v +Y+++t 
   mKIAA1340   157    HIRKQQMVSVEETIYIVGGCLHelgpnrrssqsEDMLTVQSYNTVTR 203  

                   tWtklpsmp<-*
                   +W +l + +   
   mKIAA1340   204 QWLYLKENT    212  

//