hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00936/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1336  ( 929 res)   mfj00936

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    37.9    1.3e-06   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4      19    56 ..     1    46 []     9.7       14
WD40       2/4      74   113 ..     1    46 []    18.6     0.55
WD40       3/4     118   157 ..     1    46 []     7.0       38
WD40       4/4     161   198 ..     1    46 []     2.7  1.9e+02

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 19 to 56: score 9.7, E = 14
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +k +++ +  +      +++++ d        ++a+g++Dg +++ 
   mKIAA1336    19    LsKKIAVPN--NV--KLKCISWNKDQ------GFIACGGeDGLLKVL 55   

                   d<-*
                       
   mKIAA1336    56 R    56   

WD40: domain 2 of 4, from 74 to 113: score 18.6, E = 0.55
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +  + l+gH+g  +V  v+++         + l +++++g i +W
   mKIAA1336    74    NlSMNQNLEGHSG--AVQVVTWNEQY------QKLTTSDqNGLIIVW 112  

                   d<-*
                       
   mKIAA1336   113 M    113  

WD40: domain 3 of 4, from 118 to 157: score 7.0, E = 38
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++   ++ +  ++   V+s++++ dg      + ++   +Dg + + 
   mKIAA1336   118    SwYEEMINNRNKS--VVRSMSWNADG------QKICIVYeDGAVIVG 156  

                   d<-*
                   +   
   mKIAA1336   157 S    157  

WD40: domain 4 of 4, from 161 to 198: score 2.7, E = 1.9e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++   + lkg +     ++v++s d+      ++l+ g  +g i+++
   mKIAA1336   161    NrIWGKDLKGIQL----CHVTWSADS------KILLFGMaNGEIHIY 197  

                   d<-*
                   d   
   mKIAA1336   198 D    198  

//