hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj00936/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1336 ( 929 res) mfj00936 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- WD40 WD domain, G-beta repeat 31.4 2.1e-05 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- WD40 1/3 19 56 .. 1 38 [] 12.5 5.8 WD40 2/3 76 113 .. 1 38 [] 15.5 1.3 WD40 3/3 120 157 .. 1 38 [] 3.4 78 Alignments of top-scoring domains: WD40: domain 1 of 3, from 19 to 56: score 12.5, E = 5.8 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* +++ + c++++ d + ++a+g++Dg +k+ mKIAA1336 19 LSKKIAvPNNVKLKCISWNKD-QGFIACGGEDGLLKVLR 56 WD40: domain 2 of 3, from 76 to 113: score 15.5, E = 1.3 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* + l+gH+++V v ++ ++ l ++ +g i +W mKIAA1336 76 SMNQNLeGHSGAVQVVTWNEQ-YQKLTTSDQNGLIIVWM 113 WD40: domain 3 of 3, from 120 to 157: score 3.4, E = 78 *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-* + + +s V++++++ d g+ ++ +Dg + + + mKIAA1336 120 YEEMINnRNKSVVRSMSWNAD-GQKICIVYEDGAVIVGS 157 //