hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm09174/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1334 ( 992 res) mpm09174 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Ank Ankyrin repeat 173.2 4.2e-48 7 DUF827 Plant protein of unknown function (DUF827) -101.6 0.047 1 Filament Intermediate filament protein -176.7 0.17 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Ank 1/7 31 64 .. 1 33 [] 3.2 70 Ank 2/7 65 97 .. 1 33 [] 36.2 7.6e-07 Ank 3/7 98 130 .. 1 33 [] 27.5 0.00032 Ank 4/7 131 163 .. 1 33 [] 31.6 1.8e-05 Ank 5/7 164 196 .. 1 33 [] 42.1 1.2e-08 Ank 6/7 197 229 .. 1 33 [] 40.1 5e-08 Ank 7/7 230 265 .. 1 33 [] 6.5 23 DUF827 1/1 427 632 .. 1 551 [] -101.6 0.047 Filament 1/1 549 826 .. 1 359 [] -176.7 0.17 Alignments of top-scoring domains: Ank: domain 1 of 7, from 31 to 64: score 3.2, E = 70 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* + L A+++g++e v Ll+++GA+ +d mKIAA1334 31 KNDDRLLQAVENGDAEKVASLLGkKGASATKHDS 64 Ank: domain 2 of 7, from 65 to 97: score 36.2, E = 7.6e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G T+ HlAa +g++e++k + +G d+ aqd mKIAA1334 65 EGKTAFHLAAAKGHVECLKVMVTHGVDVTAQDS 97 Ank: domain 3 of 7, from 98 to 130: score 27.5, E = 0.00032 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G ++LH+Aa++g++e+++ Ll++ d+ mKIAA1334 98 SGHSALHVAAKNGHPECIRKLLQYKSPAENIDN 130 Ank: domain 4 of 7, from 131 to 163: score 31.6, E = 1.8e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G T+LH+Aa g+l+ v+lL ++ +n++d mKIAA1334 131 SGKTALHYAAAQGCLQAVQLLCEHKSPINLKDL 163 Ank: domain 5 of 7, from 164 to 196: score 42.1, E = 1.2e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+ PL +A+++g+ e + +Ll++GAd+n +d+ mKIAA1334 164 DGNIPLLVAVQNGHSEACHFLLDHGADVNSRDK 196 Ank: domain 6 of 7, from 197 to 229: score 40.1, E = 5e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+T+L+lA++ g+ + v L+++GAdl ++d mKIAA1334 197 NGRTALMLACETGSSNTVDALIKKGADLSLVDS 229 Ank: domain 7 of 7, from 230 to 265: score 6.5, E = 23 *->dGfTPLHlAalrgnlevvklLls...qGAdlnaqdd<-* G +LH+ l+ n+ + lLls+ +q Adl ++ mKIAA1334 230 LGHNALHYSKLSENAGIQNLLLSkisQDADLKTPTK 265 DUF827: domain 1 of 1, from 427 to 632: score -101.6, E = 0.047 *->sAPFeSVKEAVtlFGgiafWKahyatRLkklqsserrktvsfedVsd s+P ++h L +++ +++ mKIAA1334 427 SPP-----------------VEH----LAGTSTTDNDVII------- 445 eetELekvqkeapelKkeLenaEreklqVLkELEsTKrtveeLklkLEka +q + +l+k Le +E+ek q +EL s ++ mKIAA1334 446 -----RQLQDSLHDLQKRLESSEAEKKQLQDELQS------------QR- 477 ekeeqqAkqdsElAklRvEEmEqGiadeASVaaktqlEVAkEryisatsE mKIAA1334 - -------------------------------------------------- - LdsvKeELekvrqeynslleEKdlAlkrAEEAvlaskvvekkveeLtkEl mKIAA1334 - -------------------------------------------------- - iAtKeslEsahaaHleAeEerigiamekdqdreayekelkeAeeeLqrLn mKIAA1334 - -------------------------------------------------- - qeldpELkkDlkakLdeasaeledLkeElaaykeSkikeEaevieeegei + mKIAA1334 478 ------------------------------------------------TD 479 aaqesshdimssvasitkELeeAKmnLeKaaeEeksl..rslveSLkqEL ++ +++ i++ + ++ L+e+ + e+a++E+ s ++++ + L qE mKIAA1334 480 TLCLNNTEISENGSDLSQKLKETQSKYEEAMKEVLSVqkQMKLGLLSQES 529 eeeKaeleelrqREgeasiavaSLeaELsRtksEIelvkskEkearEekm + + l +E+ a E mKIAA1334 530 ADGYSHL---------------------------------REAPADE--- 543 vElpkklqqasrEAeeaKkeAenareelrkakeEaEqaktalstaEkrLv ++ +++ l ka+eE++ +k ++ E++L mKIAA1334 544 -----DIDTLKQD--------------LQKAVEESARNKERVRELETKL- 573 aArKeiEaAKaaEklAiaeIKaLqeseesqkndeiesSprsItisleEye A Ke +A+ + + A +e+ + y+ mKIAA1334 574 -AEKEQAEATKPPAEACEELR-------------------------SSYC 597 eLskraeEaEelvnfrvaealaqvEeakeseseiLeKLEeaekeieekKa ++ E ++++ + eK ++a++ei ++K+ mKIAA1334 598 SVI---------------------ENMNKEKAFLFEKYQQAQEEIMKLKD 626 aleeAl<-* +l+ + mKIAA1334 627 TLKSQM 632 Filament: domain 1 of 1, from 549 to 826: score -176.7, E = 0.17 *->nEKeqmQnLNDRLAsYIdKVRfLEqqNkeLevkieelrqkqsrggpa K+++Q s++ K + +eLe+k++e +q +++ mKIAA1334 549 --KQDLQKAVE--ESARNK-----ERVRELETKLAEKEQAEAT---- 582 svsrlyslYeteieeLRrqidqltner.......arlqlEidnlrealed + +++e+ +++i+ +++e+ ++ ++q Ei +l+ ++ mKIAA1334 583 --KPPAEACEELRSSYCSVIENMNKEKaflfekyQQAQEEIMKLK---DT 627 frkKyedKeDLaaQnqlkdlEi.....alntkeaeLaTaLeRqeaEndlv ++ + + E++++++ + +++++ ++ mKIAA1334 628 LKSQMPQ-------------EApddsgDM------------KEAMNRMID 652 gLRaQiAklEslaaRkdlDeaTLarvDLEnkvEsLqEElaFLKknHeEEv L k++ e+ ++L +++++ E+ +K + + mKIAA1334 653 EL------------NKQVSEL----SQLYREAQAELEDYRKRKSLEDAAE 686 keLqaqiqdtgqvnVEmDaarqqEwklDLtkaLrEiRaQYEeiAeknrqe +a +++ ++V+ + k++ +aL E+++QY +++ + + mKIAA1334 687 YIHKAEHERL--MHVSNLSRA----KSE--EALSEMKSQY-SKVLNELTQ 727 aEewYksKleeLqtaaarngealrsaKeEitElRRqiQsLeiELqslksq + + + e+ + +++ + + + + ++ +E+ i +L+ +L++ ++ mKIAA1334 728 LKQLVDAHKEN-SVSITEHLQVITTLRTTAKEMEEKISALTGHLANKEAE 776 nasLErqlaElEeryeael...aqyqalisqlEeeLqqlreEMarqLrEY a+LE+qlaE ++ + ++ +++ y++l ++lE+e+ l + rE mKIAA1334 777 VAKLEKQLAEEKAAVSDAMvpkSSYEKLQASLESEVNALATKLKESVRE- 825 QeLLdVKlaLDiEIATYRKLLEGEEsR<-* R mKIAA1334 826 --------------------------R 826 //