hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm08381/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1333  ( 731 res)   mpm08381

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HECTc    Domain Homologous to E6-AP Carboxyl Terminus   -90.8    1.5e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HECTc      1/1     380   717 ..     1   407 []   -90.8  1.5e-05

Alignments of top-scoring domains:
HECTc: domain 1 of 1, from 380 to 717: score -90.8, E = 1.5e-05
                   *->nsspddLkkrskeaLeIef..........v.vnehgvgEeglDgGGv
                      ++ ++ +++     Le +f++++ +++ +++v     +E g + +G 
   mKIAA1333   380    INKANVWRSA----LE-QFqsqkfnpscsIdVVYVNGNEVGSQHLGS 421  

                   trEFffllskelfnptdygLFryspndnaeksktiYigrlrylLfpnPsa
                     EF++ l + l n  ++  F+ s  +n               L  n  a
   mKIAA1333   422 KQEFLSHLMHHLENS-SV--FEGSLAKN---------------LSLNSQA 453  

                   gfaneehlaavyFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtd
                      ++      +++ +G++l++ l ++   + +F+  ++  L   p +t+
   mKIAA1333   454 VK-EN------LYYEVGKMLAISLVHGGPSPGFFSETLFNCLAYGPENTL 496  

                   vtlhDleslDPelyksLvwLilvrrKleleeDlseeskslenditeveld
                   +tl+D +++D  + + + ++           Dl++  ++++ + +++e  
   mKIAA1333   497 PTLDDVSDID--VAQIIIKI-------DSATDLNILNSVISQHYNYLEVS 537  

                   maLtFsivlesdfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkg
                   ++L ++++l  +f  vk++                        +y+ +++
   mKIAA1333   538 GCLRLTTSLSDKFMLVKDI-----------------------LFYHVINR 564  

                   vekqleAFreGFseVipeelLrylFdeeELeLLicGleeeidvddLksnT
                   v+ ++e F++G++ +  +e ++  ++e    +L c  +e+++++ L    
   mKIAA1333   565 VKAPFESFKQGLKTLGVLEKIQ-TYPEAFYKIL-CHKPENLSAKNLSDLF 612  

                   eyrggYtensqtirfkkwFWevve...sFtneerrkLLqFVTGssrlPAS
                   + +  + ++ qt+rf      ++e+++s t +e  + L F TG+s++P  
   mKIAA1333   613 TIH--SVADVQTLRFWNSYLKAIEdgkSATTME--DILIFATGCSSVP-- 656  

                   vgGFa.aLspsNGpqkF.tIrkagsetlsdddrLPtAhTCfNrLkLPpYs
                   + GF+++L       ++++++++++    d++r        N L LP  +
   mKIAA1333   657 PTGFKpSL-------SVeCLHVDFP--VADKYR--------NHLVLPATN 689  

                   SkeiLreKLLlAIneg.R.iggeGFgls<-*
                   ++e  +e +   I+   R  + e  + +   
   mKIAA1333   690 TYEEFQENMDFTIRDTlRlEKEERSHIL    717  

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