hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm08381/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1333  ( 731 res)   mpm08381

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           10.9      0.075   1
PHD      PHD-finger                                      -3.4       0.61   1
HECT     HECT-domain (ubiquitin-transferase)            -92.3    0.00016   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/1      95   130 ..     1    51 []    -3.4     0.61
zf-C3HC4   1/1     159   207 ..     1    50 []    10.9    0.075
HECT       1/1     427   707 ..     1   366 []   -92.3  0.00016

Alignments of top-scoring domains:
PHD: domain 1 of 1, from 95 to 130: score -3.4, E = 0.61
                   *->yCsvCgkpdddaggdllqCD..gCdrwfHlaClgppleeppegkWlC
                       C vC+k      g  ++C  ++C+r++Hl C g+  e         
   mKIAA1333    95    KCTVCKK-----NGASIGCVvpTCKRSYHLPC-GLQKE--------- 126  

                   peCtpk<-*
                     C++    
   mKIAA1333   127 --CIFQ    130  

zf-C3HC4: domain 1 of 1, from 159 to 207: score 10.9, E = 0.075
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsCl.erwlsssgntt
                      C ICle  ++ +++ +l +pC ++  +++f+r+Cl+++ ++  + + 
   mKIAA1333   159    CTICLEFVEPIPTYNILQSPC-CK--NAWFHRDCLqVQAIN--AGVF 200  

                   ...CplC<-*
                     +C lC   
   mKIAA1333   201 ffrCTLC    207  

HECT: domain 1 of 1, from 427 to 707: score -92.3, E = 0.00016
                   *->tLlsrelfnPdygLFeysdnseakseeddsysgyvedsytlfpnPls
                      + l++ l   +   Fe                  ++  + l  n   
   mKIAA1333   427    SHLMHHLE--NSSVFE------------------GSLAKNLSLNSQA 453  

                   gesnpehervlkyFkflGrilGlAlydgrllDlpFsraFyKklLm.a.gk
                    +         ++++ +G++l+++l +g + + +Fs  ++  l  + ++ 
   mKIAA1333   454 VK--------ENLYYEVGKMLAISLVHGGPSPGFFSETLFNCLAYgPeNT 495  

                   psigivtleDlesvDPelynSLkwllendgdKkIedsLLgsledveedLe
                        +tl+D  ++D       + + ++d                  dL 
   mKIAA1333   496 L----PTLDDVSDIDVA-----QIIIKIDSA---------------TDLN 521  

                   LtFsveeessvgfeadarffGgtktveELkPnGrnipVTneNkeeY..ve
                   +  sv  +             ++ +v      G     T +  + +  v+
   mKIAA1333   522 ILNSVISQH-----------YNYLEVS-----GCLR-LTTSLSDKFmlVK 554  

                   lyvdyrLnkgiekQfeAFrkGFsevipsrlLslFdpeELelLicGspee.
                    +  y ++++++ +fe+F++G+ ++  ++ ++  +pe    ++c  p e+
   mKIAA1333   555 DILFYHVINRVKAPFESFKQGLKTLGVLEKIQT-YPEAFYKILCHKP-En 602  

                   iDvddLkenTeYdggYtedsplktiqwFW....evlee.ftneeraklLq
                   ++ + L +  + +  + +d +  t  +FW++  +++e + +   + + L 
   mKIAA1333   603 LSAKNLSDLFTIH--SVADVQ--TL-RFWnsylKAIEDgKSATTMEDILI 647  

                   FvTGssRlPvgGFkaLqgGsnGpPkFtIvrkegggdddrLPtAhTCFNrL
                   F TG+s++P+ GF   +      P++ +++      + + P+A    N L
   mKIAA1333   648 FATGCSSVPPTGF---K------PSLSVECL-----HVDFPVADKYRNHL 683  

                   kLPpYsSkeiLrekLllAInEgseGFgle<-*
                    LP  +++e  +e     I+       l+   
   mKIAA1333   684 VLPATNTYEEFQENMDFTIRD-----TLR    707  

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