hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03238/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1331  ( 571 res)   mbh03238

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Peptidase_C48 Ulp1 protease family, C-terminal cataly   179.4    5.8e-50   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Peptidase_C48   1/1     377   569 ..     1   245 []   179.4  5.8e-50

Alignments of top-scoring domains:
Peptidase_C48: domain 1 of 1, from 377 to 569: score 179.4, E = 5.8e-50
                   *->isitmrdlktltkkewlnDtiidfylrylaerllpdPilkekftsal
                        it  d++tl + +wlnD++i+fy+++l+er+        k+  + 
   mKIAA1331   377    LRITRGDIQTLKNYHWLNDEVINFYMNLLVERS-------KKQGYPA 416  

                   thffnsFfytklksrfkwgdekdelykdvkrgtargekkkkkdlfdkDyi
                   +h+f++Ffy+klks +         y+ vkr+t      k++ lf+ + +
   mKIAA1331   417 LHAFSTFFYPKLKSGG---------YQAVKRWT------KGVNLFEQELV 451  

                   yvPinedgkksHWvllvIdlpdkkkkdqstivilDSlislntekavktit
                   +vPi+ +    HW+l+v dl++k      +  +lDS+++   +    ++ 
   mKIAA1331   452 LVPIHRKV---HWSLVVMDLRKK------CLKYLDSMGQKGHR----ICE 488  

                   alarplsdelpylkrerlslkksfdkkswdlqpfe...ikrltmkvPQQp
                   +l ++l+de +  kr+             dl+  e +++ + ++++PQQ 
   mKIAA1331   489 ILLQYLQDESKT-KRN------------TDLNLLEwthYSMKPHEIPQQL 525  

                   ngyDCGiyvlkfielfaegppqdfmttindkklkdlksfrkklakeiyee
                   ng+DCG++++k++++++++ p +f++        +++ frkk++ ei+++
   mKIAA1331   526 NGSDCGMFTCKYADYISRDKPITFTQ-------HQMPLFRKKMVWEILHQ 568  

                   l<-*
                   +   
   mKIAA1331   569 Q    569  

//