hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp19063/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1330  ( 1151 res)   mbp19063

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
I-set        Immunoglobulin I-set domain                -12.6       0.13   1
Alpha_kinase Alpha-kinase family                        -78.1     0.0078   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
I-set          1/1     722   812 ..     1    97 []   -12.6     0.13
Alpha_kinase   1/1     865  1063 ..     1   241 []   -78.1   0.0078

Alignments of top-scoring domains:
I-set: domain 1 of 1, from 722 to 812: score -12.6, E = 0.13
                   *->PkFtqkp.kdveVqeGesarfeCkVtGt.PePtVsWfKdGqplssvl
                      P+ ++k++  +      s+++ C+      +   +W Kd  p+ +  
   mKIAA1330   722    PQVIRKIrVEQFPDSSGSLKLWCQFFNIvSDSVLTWAKDQHPVGE-- 766  

                   lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt
                        ++ ++ +  g + L I ++ p D G+Y+C+ +N+ G+a++++ L 
   mKIAA1330   767 -----VNRRAGD-EGPAALAIVQASPTDCGVYRCTIQNEHGSASTDFCLS 810  

                   Vq<-*
                    +   
   mKIAA1330   811 PE    812  

Alpha_kinase: domain 1 of 1, from 865 to 1063: score -78.1, E = 0.0078
                   *->stskWtqsevlvkleklstpfakGalReA.frvkklsqedDilKlga
                         k ++  v+  le+    f  G  R++  +v +l +         
   mKIAA1330   865    GLQKASRAKVIYGLEPI---FESG--RTCiIKVSSLLV--------- 897  

                   lfivksdlkevgryvsKiykeqtsrhlyFeDVqmQmaAkkwaeeF.NqlK
                    f+ +s+++++gr ++          +     + Q   + +   F  ++ 
   mKIAA1330   898 -FGPSSETSLLGRNYD----------VTIQGCKIQNMSREYCKIFaAEAR 936  

                   aeqNiPpkki.dflqscvveLiDrtgsgnGqgplcsiEpyieGeFrKYNn
                          + +++ +  + + Li+r+  +    p  ++E+ +      Y +
   mKIAA1330   937 -----AASGFgEVPEIIPLYLIYRPANN---IPYATLEEDLGKPLQTYCS 978  

                   Ns.GdenKEvfvstddaretpQAFSHFTYErSnhqllVvDlQGVgtGNGK
                      G +   ++ s+  a +  Q F H+ Y  +n+ +lV Dl G +     
   mKIAA1330   979 RQwGCAGAPAAASSSEALQKCQTFQHWLYQWTNGSFLVTDLTGAD----- 1023 

                   GLdlyTDPQIHTvdpKrSy...GtgFGdgNLGerGiakFfNNatHkCNai
                       +TD QI T+   r y++  ++ +++ L       F    +H CN  
   mKIAA1330  1024 --WKMTDVQIATKL--RGYqglKESCFPALL-----DQFA--SSHQCNTY 1062 

                   C<-*
                   C   
   mKIAA1330  1063 C    1063 

//