hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00105/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1329  ( 1185 res)   mbg00105

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BNR      BNR/Asp-box repeat                              35.4    1.3e-06   6
PKD      PKD domain                                      24.4     0.0026   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BNR        1/6     208   219 ..     1    12 []     8.0       72
BNR        2/6     258   269 ..     1    12 []    12.3       12
BNR        3/6     299   310 ..     1    12 []    10.9       30
BNR        4/6     494   505 ..     1    12 []     1.7  4.7e+02
BNR        5/6     571   582 ..     1    12 []     6.8    1e+02
BNR        6/6     613   624 ..     1    12 []    11.2       25
PKD        1/2     813   895 ..     1    92 []    17.1     0.17
PKD        2/2     906   981 ..     1    92 []     7.0      1.5

Alignments of top-scoring domains:
BNR: domain 1 of 6, from 208 to 219: score 8.0, E = 72
                   *->yyStDgGkTWsk<-*
                      ++S D+G T +k   
   mKIAA1329   208    WRSSDFGTTYTK    219  

BNR: domain 2 of 6, from 258 to 269: score 12.3, E = 12
                   *->yyStDgGkTWsk<-*
                      ++StD G+T++k   
   mKIAA1329   258    FLSTDEGATFQK    269  

BNR: domain 3 of 6, from 299 to 310: score 10.9, E = 30
                   *->yyStDgGkTWsk<-*
                      y+S D Gk W++   
   mKIAA1329   299    YVSSDLGKKWTL    310  

BNR: domain 4 of 6, from 494 to 505: score 1.7, E = 4.7e+02
                   *->yyStDgGkTWsk<-*
                       ++++ G+ W +   
   mKIAA1329   494    VITYNKGRDWDY    505  

BNR: domain 5 of 6, from 571 to 582: score 6.8, E = 1e+02
                   *->yyStDgGkTWsk<-*
                      y++ D G TW     
   mKIAA1329   571    YITSDCGHTWRQ    582  

BNR: domain 6 of 6, from 613 to 624: score 11.2, E = 25
                   *->yyStDgGkTWsk<-*
                       +S D G TWs+   
   mKIAA1329   613    KFSVDEGHTWST    624  

PKD: domain 1 of 2, from 813 to 895: score 17.1, E = 0.17
                   *->vsasaveegpsvvalgetVtFtassSydpdpgspvsysWdFGD...g
                      + ++     +  v + e V F  +   ++d    + y+ d GD+ + 
   mKIAA1329   813    IRGE-----AVAVRPREDVLFVVRQ-EQGD-VLTTKYQVDLGDgfkA 852  

                   gstgltstepnvtHtYskgsVtpGtYtVtLtvsNgvgsasattttvtV<-
                       lt+t+  + H Y++    pG Y V+++++N++g++ a  ++v V  
   mKIAA1329   853 MYVNLTLTGEPIRHHYES----PGIYRVSVRAENMAGHDEAV-LFVQV   895  

                   *
                    
   mKIAA1329     -   -    

PKD: domain 2 of 2, from 906 to 981: score 7.0, E = 1.5
                   *->vsasaveegpsvvalgetVtFtassSydpdpgspvsysWdFGDggst
                      v+++        + ++++V++ta + +  + ++ + + W  G  + +
   mKIAA1329   906    VVPV--------IGVNQEVNLTAVL-LPLN-PNLTVFYWWIGH-SLQ 941  

                   gltstepnvtHtYskgsVtpGtYtVtLtvsNgvgsasattttvtV<-*
                   +l s   +vt +++     +G+  Vt+ +  g++    + + v V   
   mKIAA1329   942 PLLSLDNSVTTKFTD----AGDVRVTVQAACGNSVLQDS-RLVRV    981  

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