hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file: /cdna4/rodent/full/goal/mbp/mbp03171/w3open/interpro/cnk_1/seq.in
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Query: mKIAA1325 ( 356 res) mbp03171
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Sel1 Sel1 repeat 109.7 5.7e-29 5
TPR_2 Tetratricopeptide repeat 30.5 3.8e-05 2
TPR_1 Tetratricopeptide repeat 17.5 0.29 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TPR_1 1/1 68 101 .. 1 34 [] 17.5 0.29
TPR_2 1/2 68 101 .. 1 34 [] 28.4 0.00017
Sel1 1/5 99 134 .. 1 58 [] 16.2 0.78
Sel1 2/5 142 177 .. 1 58 [] 33.4 5.2e-06
Sel1 3/5 182 215 .. 1 58 [] 13.6 2.1
Sel1 4/5 216 251 .. 1 58 [] 35.5 1.2e-06
Sel1 5/5 306 341 .. 1 58 [] 23.1 0.0066
TPR_2 2/2 306 343 .. 1 34 [] 5.0 56
Alignments of top-scoring domains:
TPR_1: domain 1 of 1, from 68 to 101: score 17.5, E = 0.29
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a ay+ +G++y++ g y+eA++ +e+ e d +
mKIAA1325 68 AMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQA 101
TPR_2: domain 1 of 2, from 68 to 101: score 28.4, E = 0.00017
*->aealynlGlayyklgdyeeAleayekAleldPnn<-*
a a++++G++y++ g yeeAl+ +e+ e d ++
mKIAA1325 68 AMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQA 101
Sel1: domain 1 of 5, from 99 to 134: score 16.2, E = 0.78
*->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
+A y+LG +y++Gl G + + ek +
mKIAA1325 99 HqAIYQLG-------VMYYDGL------G--TIA------NAEK--G 122
lkwyekAAeqGn<-*
+ +++k +
mKIAA1325 123 VNYMRKILDSSC 134
Sel1: domain 2 of 5, from 142 to 177: score 33.4, E = 5.2e-06
*->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
A+ynLG ++y++G+ G v++ e+ A
mKIAA1325 142 FaAAYNLG-------RAYFEGK------G--VKR------SDEE--A 165
lkwyekAAeqGn<-*
+++ +AA++Gn
mKIAA1325 166 ERLWLLAADNGN 177
Sel1: domain 3 of 5, from 182 to 215: score 13.6, E = 2.1
*->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
++Aq LG + ++ ++ p+ +ek A
mKIAA1325 182 VkAQSILG-------L--FYS----------MKE----PKELEK--A 203
lkwyekAAeqGn<-*
+ w A+ +G+
mKIAA1325 204 FFWHSEACGNGS 215
Sel1: domain 4 of 5, from 216 to 251: score 35.5, E = 1.2e-06
*->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
++q +LG ++y++G+ G +++ D + A
mKIAA1325 216 LeSQGALG-------LMYFYGQ------G--IRQ------DTDA--A 239
lkwyekAAeqGn<-*
l++++ AAe+Gn
mKIAA1325 240 LHCLREAAERGN 251
Sel1: domain 5 of 5, from 306 to 341: score 23.1, E = 0.0066
*->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
a A+++ G ++++ Gl G + k D e A
mKIAA1325 306 AmAAFYHG-------RCLQLGL------G--IMK------DEES--A 329
lkwyekAAeqGn<-*
++y kA++++
mKIAA1325 330 KHYYSKACRLNP 341
TPR_2: domain 2 of 2, from 306 to 343: score 5.0, E = 56
*->aealynlGlayyk....lgdyeeAleayekAleldPnn<-*
a a ++ G+++ + + ++d e A+++y kA +l+P+
mKIAA1325 306 AMAAFYHGRCLQLglgiMKDEESAKHYYSKACRLNPTL 343
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