hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm05352/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1323  ( 143 res)   mpm05352

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RING     Ring finger                                     35.7    6.4e-06   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RING       1/2       3    37 ..     1    23 []    15.4     0.33
RING       2/2     100   132 ..     1    23 []    28.2   0.0012

Alignments of top-scoring domains:
RING: domain 1 of 2, from 3 to 37: score 15.4, E = 0.33
                   *->CpICle....pvvlpCgH..FCr.Ci.....CPlC<-*
                      C +C +++  + + pCgH   C++C +  ++C +C   
   mKIAA1323     3    CVVCSDkkaaVLFQPCGHmcACEnCAslmkkCVQC    37   

RING: domain 2 of 2, from 100 to 132: score 28.2, E = 0.0012
                   *->CpICle...pvvlpCgH.FCr.Ci.....CPlC<-*
                      Cp+Cl++ + ++  CgH+ C+ C ++ ++CP+C   
   mKIAA1323   100    CPVCLDrlkNMIFLCGHgTCQlCGdrmseCPIC    132  

//