hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbh/mbh00387/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1322 ( 645 res) mbh00387 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable 196.0 3.4e-54 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TBC 1/1 350 586 .. 1 310 [] 196.0 3.4e-54 Alignments of top-scoring domains: TBC: domain 1 of 1, from 350 to 586: score 196.0, E = 3.4e-54 *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd +++G+pps+Rg+VW l +++ + t+++++ ++ mKIAA1322 350 WWQGIPPSVRGKVWSLAIGNELNITHELFD-------------ICLA 383 rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl r k+++++l + +++ + +d+ ++++ d+e sl mKIAA1322 384 RAKERWRSLSTGGSEVEN-EDAGFSAA----DREA-------------SL 415 dqIekDlkRTfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl I +D++RTfp+l Fq+ +gp++++L+ +L aY mKIAA1322 416 ELIKLDISRTFPNLCIFQQ--------------GGPYHDMLHSILGAYTC 451 ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk y+p+ vgY+QGm+f+aa+L l++ d +dAF++f++L++ +++ ++f mKIAA1322 452 YRPD--VGYVQGMSFIAAVLILNL---DTADAFIAFSNLLNKPCQMAFF- 495 dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdkl + d + + ++ ++ee lP+L+ H+++ + mKIAA1322 496 ------RVDHGLMLTYFAAFEVFFEENLPKLFAHFKK------------N 527 eidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkiala +++++y++ W++tl+++ lPl++++RiwDv+ + g+eflf++al mKIAA1322 528 NLTADIYLIDWIFTLYSKSLPLDLACRIWDVFCRD----GEEFLFRTALG 573 iLklnedkllkld<-* iLkl ed+l ++d mKIAA1322 574 ILKLFEDILTRMD 586 //