hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mef/mef00242/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1320  ( 150 res)   mef00242

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HECTc    Domain Homologous to E6-AP Carboxyl Terminus   -65.6    7.8e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HECTc      1/1       1   150 []     1   407 []   -65.6  7.8e-07

Alignments of top-scoring domains:
HECTc: domain 1 of 1, from 1 to 150: score -65.6, E = 7.8e-07
                   *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske
                                                                     
   mKIAA1320     -    ----------------------------------------------- -    

                   lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav
                                                                     
   mKIAA1320     - -------------------------------------------------- -    

                   yFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDleslDP
                                                     +               
   mKIAA1320     1 ----------------------------------K--------------- 1    

                   elyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsivles
                       +L+w+                   l+ndi++++l+  LtF +v++ 
   mKIAA1320     2 ----NLQWI-------------------LDNDISDLGLE--LTF-SVETD 25   

                   dfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAFreG
                    fg  ++v+LkpGG +i VT+ Nk EYV lv+e r+++ ++ q +AF++G
   mKIAA1320    26 VFGAMEEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQG 75   

                   FseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYtensq
                   F++ ip++l++ lFde ELeLL++G++ eidv+d+++nTey  gY ++++
   mKIAA1320    76 FHMFIPPSLIQ-LFDEYELELLLSGMP-EIDVNDWIKNTEYTSGYEREDP 123  

                   tirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaLspsNGpq
                   +i   +wFWevve  t+eer +LLqFVTG+                    
   mKIAA1320   124 VI---QWFWEVVEDITQEERVLLLQFVTGR-------------------- 150  

                   kFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKLLlAIneg
                                                                     
   mKIAA1320     - -------------------------------------------------- -    

                   RiggeGFgls<-*
                                
   mKIAA1320     - ----------    -    

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