hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mef/mef00242/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1320  ( 150 res)   mef00242

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HECT     HECT-domain (ubiquitin-transferase)             61.2    2.2e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HECT       1/1       1   150 []     1   366 []    61.2  2.2e-14

Alignments of top-scoring domains:
HECT: domain 1 of 1, from 1 to 150: score 61.2, E = 2.2e-14
                   *->tLlsrelfnPdygLFeysdnseakseeddsysgyvedsytlfpnPls
                                                                     
   mKIAA1320     -    ----------------------------------------------- -    

                   gesnpehervlkyFkflGrilGlAlydgrllDlpFsraFyKklLmagkps
                                                                     
   mKIAA1320     - -------------------------------------------------- -    

                   igivtleDlesvDPelynSLkwllendgdKkIedsLLgsledveedLe..
                                    ++L+w+l+nd++                dL+ +
   mKIAA1320     1 -----------------KNLQWILDNDIS----------------DLGle 17   

                   LtFsveeessvgfeadarffGgtktveELkPnGrnipVTneNkeeYvely
                   LtFsve ++   f       G +++v+ LkP+G +i VT++Nk eYv+l+
   mKIAA1320    18 LTFSVETDV---F-------GAMEEVP-LKPGGGSILVTQNNKAEYVQLV 56   

                   vdyrLnkgiekQfeAFrkGFsevipsrlLslFdpeELelLicGspeeiDv
                   ++ r+++ i++Q++AF++GF++ ip++l++lFd++ELelL++G+p eiDv
   mKIAA1320    57 TELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDEYELELLLSGMP-EIDV 105  

                   ddLkenTeYdggYtedsplktiqwFWevleeftneeraklLqFvTGssRl
                   +d+++nTeY +gY +++p  +iqwFWev+e  t+eer +lLqFvTG    
   mKIAA1320   106 NDWIKNTEYTSGYEREDP--VIQWFWEVVEDITQEERVLLLQFVTG---- 149  

                   PvgGFkaLqgGsnGpPkFtIvrkegggdddrLPtAhTCFNrLkLPpYsSk
                                                                     
   mKIAA1320     - -------------------------------------------------- -    

                   eiLrekLllAInEgseGFgle<-*
                              +            
   mKIAA1320   150 -----------R---------    150  

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