hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp02166/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1317  ( 418 res)   mbp02166

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac        37.7    1.6e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      16   121 ..     1   114 []    37.7  1.6e-06

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 16 to 121: score 37.7, E = 1.6e-06
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      + + l+vgg         + +++  H ++ +      + + ++f+ +
   mKIAA1317    16    EVIELNVGG---------QVYFT-RHSTLISIP---HSLLWKMFSPk 49   

                   .............ieldDeallievspeaFralLnflYt.kldlpeedve
                   +++ ++  +++++ +++D      ++   Fr +L++l+++++ lp+  + 
   mKIAA1317    50 rdtandlakdskgRFFID------RDGFLFRYILDYLRDrQVVLPDH-FP 92   

                   nveelLelAdfldSYGqip.lvelCeefllknl<-*
                   +   l ++A+++    q+p+lv+l     +k++   
   mKIAA1317    93 ERGRLKREAEYF----QLPdLVKLLAPEDVKQS    121  

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