hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp02166/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1317  ( 418 res)   mbp02166

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
K_tetra  K+ channel tetramerisation domain               71.9    1.3e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
K_tetra    1/1      18   113 ..     1   102 []    71.9  1.3e-17

Alignments of top-scoring domains:
K_tetra: domain 1 of 1, from 18 to 113: score 71.9, E = 1.3e-17
                   *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd
                      + LNVGG ++ T+ sTL  + P++lL ++++    + +++ +d  +d
   mKIAA1317    18    IELNVGGQVYFTRHSTLISI-PHSLLWKMFS----PKRDTANDLAKD 59   

                   dtnEyFFDRsPkhFetILnfYRtGdGkLhrpevcld.sfleEleFyglde
                   +++ +F+DR+  +F++IL+++R+ +++L++ + ++++ +++E+e+++l++
   mKIAA1317    60 SKGRFFIDRDGFLFRYILDYLRDRQVVLPD-HFPERgRLKREAEYFQLPD 108  

                   laielC<-*
                   l + l    
   mKIAA1317   109 L-VKLL    113  

//