hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph03038/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1314  ( 637 res)   mph03038

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   GTPase-activator protein for Rho-like GTPase   130.1    2.3e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGAP     1/1     308   486 ..     1   193 []   130.1  2.3e-34

Alignments of top-scoring domains:
RhoGAP: domain 1 of 1, from 308 to 486: score 130.1, E = 2.3e-34
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                        +P++++k ++ +e+ Gl+ eGI+R+sG + +vk+ re++d     
   mKIAA1314   308    VKVPLVLQKFFQKVEESGLESEGIFRLSGCTAKVKQYREELDARFNa 354  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                   d           ++ +++     +A +LK ++ReLP +L++ e+ + fi+
   mKIAA1314   355 D-----------KFKWDKMCHREAAVMLKAFFRELPTSLFPVEYIPAFIS 393  

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                   +++               +d   +++al++ +  LP+anr+t ++L+ ++
   mKIAA1314   394 LMERG-------------PDIKVQFQALHLMVMALPDANRDTAQALMaFF 430  

                   nrVaehsevNkMtarNLAivFgPtLlrpp........ltdikhqnkvvet
                   n+V++++++N+M++ N ++v +P+L+ +++++++ ++l +++  ++++  
   mKIAA1314   431 NKVIANESKNRMNLWNISTVMAPNLFFSRskhsdceeLLLANTATHIIRL 480  

                   lienad<-*
                   ++ ++    
   mKIAA1314   481 MLKYQK    486  

//