hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph03038/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1314  ( 637 res)   mph03038

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   RhoGAP domain                                  180.0    3.8e-50   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGAP     1/1     311   465 ..     1   155 []   180.0  3.8e-50

Alignments of top-scoring domains:
RhoGAP: domain 1 of 1, from 311 to 465: score 180.0, E = 3.8e-50
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      Pl+++k  + +e+ GL++EGI+R+sG+++++k+ re++d     d++
   mKIAA1314   311    PLVLQKFFQKVEESGLESEGIFRLSGCTAKVKQYREELDARFNADKF 357  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefi.eaaaksedeeerle
                    ++  +   +A +LK F+ReLP++L++ e++++fi++   + +d   + +
   mKIAA1314   358 KWDKMCHREAAVMLKAFFRELPTSLFPVEYIPAFIsL-MERGPDIKVQFQ 406  

                   alrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLl
                   al+++++ LP+aNrdt ++L+a++n+V++n+++N+M+  N+++v++P+L+
   mKIAA1314   407 ALHLMVMALPDANRDTAQALMAFFNKVIANESKNRMNLWNISTVMAPNLF 456  

                   rppdgdsad<-*
                    +++++s++   
   mKIAA1314   457 FSRSKHSDC    465  

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