hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01521/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1313  ( 969 res)   mbh01521

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CA       Cadherin repeats.                              363.1   1.7e-104   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CA         1/5       1    60 [.     1   121 []    25.9   0.0056
CA         2/5      84   168 ..     1   121 []   105.1    8e-27
CA         3/5     195   275 ..     1   121 []    89.4  4.2e-22
CA         4/5     299   385 ..     1   121 []    99.1    5e-25
CA         5/5     414   494 ..     1   121 []    58.5  8.6e-13

Alignments of top-scoring domains:
CA: domain 1 of 5, from 1 to 60: score 25.9, E = 0.0056
                   *->vsAtDaDsgsngeNgkpgdaevvtYsilslFsIdpetGtngpsLvkl
                         t  D       ++                               
   mKIAA1313     1    EIKTRGDGS---RFAE------------------------------- 13   

                   eiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptrks
                      +++ k+LDRE+q         s+Y+++++A DgG pp          
   mKIAA1313    14 ---LVVEKSLDRETQ---------SHYSFRITALDGGDPP---------- 41   

                   qqtpplsstatvtvtVlDvNDNaP<-*
                        + +t+ + ++V+D NDN P   
   mKIAA1313    42 -----HMGTVGLSIKVTDSNDNNP    60   

CA: domain 2 of 5, from 84 to 168: score 105.1, E = 8e-27
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      ++A+D+D+g   +Ng+      v+Ys+ +  ++++++lF+Idp++G 
   mKIAA1313    84    LNASDPDEG---TNGQ------VVYSFYGyvndrtreLFQIDPHSG- 120  

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                              +t+t++LD+Ee+          +Y+L v+A+D G+++  
   mKIAA1313   121 ----------LVTVTGALDYEEG---------HVYELDVQAKDLGPNS-- 149  

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  +++ vtv VlD NDN+P   
   mKIAA1313   150 -------------IPAHCKVTVSVLDTNDNPP    168  

CA: domain 3 of 5, from 195 to 275: score 89.4, E = 4.2e-22
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      v+++D+Dsg    Ng+      v +++l++ +F++ +          
   mKIAA1313   195    VRVSDRDSG---LNGR------VQCRLLGnvPFRLQEYES------- 225  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     + +i + ++LDRE++         ++Y+Lt++A+D+G p         
   mKIAA1313   226 --FSTILVDGRLDREQH---------DQYNLTIQARDSGVPM-------- 256  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          l+s  ++tv+++D+NDN P   
   mKIAA1313   257 -------LQSAKSFTVRITDENDNHP    275  

CA: domain 4 of 5, from 299 to 385: score 99.1, E = 5e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      vsA+D+D g    Ng       v+Y+i++++ ++ +  ++ sI+p++
   mKIAA1313   299    VSARDPDMG---LNGS------VSYQIVPsqvrdmpvftYVSINPNS 336  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G           +i++++++++E++         + ++++v A+DgG p+
   mKIAA1313   337 G-----------DIYALRSFNHEQT---------KAFEFKVLAKDGGLPS 366  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  l+s+atv+v++lDvNDN P   
   mKIAA1313   367 ---------------LQSNATVRVIILDVNDNTP    385  

CA: domain 5 of 5, from 414 to 494: score 58.5, E = 8.6e-13
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils....lFsIdpetGtngps
                      v+A D D+g   eNg+      vtY ++++++++F+Id+ +G     
   mKIAA1313   414    VKADDYDEG---ENGR------VTYDMTEgdrgFFEIDQVNG----- 446  

                   LvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssp
                         +++tt++++  ++         ++Y+L+v+A D+G  +      
   mKIAA1313   447 ------EVRTTRTFNENSK---------PSYELIVVAHDHGKTS------ 475  

                   trksqqtpplsstatvtvtVlDvNDNaP<-*
                            ls++a v + +    D      
   mKIAA1313   476 ---------LSASALVLIYLSPALDAQE    494  

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