hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01521/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1313  ( 969 res)   mbh01521

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Cadherin Cadherin domain                                268.2    1.1e-76   4
zf-HIT   HIT zinc finger                                  8.7       0.62   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Cadherin   1/4      67   161 ..     1   107 []    97.7  2.3e-25
Cadherin   2/4     178   268 ..     1   107 []    51.7  1.6e-11
Cadherin   3/4     282   378 ..     1   107 []    63.5  4.6e-15
Cadherin   4/4     397   487 ..     1   107 []    66.5  5.6e-16
zf-HIT     1/1     523   553 ..     1    33 []     8.7     0.62

Alignments of top-scoring domains:
Cadherin: domain 1 of 4, from 67 to 161: score 97.7, E = 2.3e-25
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg
                      ys+svpEn+p++t+v++++A+D+D  +g+Ng+++Ys+ g   ++++ 
   mKIAA1313    67    YSVSVPENSPPNTPVIRLNASDPD--EGTNGQVVYSFYGYVNdrtRE 111  

                   wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp
                    F Idp++G     +++t  LD+Ee     YeL v A+D        g+ 
   mKIAA1313   112 LFQIDPHSGL----VTVTGALDYEEG--HVYELDVQAKDL-------GPN 148  

                   plsstatvtitVl<-*
                   +  + + vt++Vl   
   mKIAA1313   149 SIPAHCKVTVSVL    161  

Cadherin: domain 2 of 4, from 178 to 268: score 51.7, E = 1.6e-11
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
                        ++v+E ap+G  ++ v+++D+D  +g+Ngr+  ++lg+ p   Fr
   mKIAA1313   178    ELVEVSESAPPGYVIALVRVSDRD--SGLNGRVQCRLLGNVP---FR 219  

                   IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls
                   ++++    +  i +  +LDRE+   ++Y+Lt+ A+D+       g p l 
   mKIAA1313   220 LQEYESFST--ILVDGRLDREQH--DQYNLTIQARDS-------GVPMLQ 258  

                   statvtitVl<-*
                   s  + t+ ++   
   mKIAA1313   259 SAKSFTVRIT    268  

Cadherin: domain 3 of 4, from 282 to 378: score 63.5, E = 4.6e-15
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.....
                      y++ v En  +G  +l+v A+D+D   g+Ng+++Y i++  +++ + 
   mKIAA1313   282    YQVIVQENNTPGAYLLSVSARDPD--MGLNGSVSYQIVPSQVrdmpv 326  

                   ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg
                       +I+p++Gd    i+  ++ + E++    +e+ v+A+D+       g
   mKIAA1313   327 FTYVSINPNSGD----IYALRSFNHEQT--KAFEFKVLAKDG-------G 363  

                   gpplsstatvtitVl<-*
                    p+l s atv++ +l   
   mKIAA1313   364 LPSLQSNATVRVIIL    378  

Cadherin: domain 4 of 4, from 397 to 487: score 66.5, E = 5.6e-16
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
                       ++ +p n+ +G  v++v+A D D  +g Ngr++Y +++g+ +g F+
   mKIAA1313   397    AEVYIPRNSGIGYLVTVVKADDYD--EGENGRVTYDMTEGD-RGFFE 440  

                   IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls
                   Id+ +G+    ++tt+  +  +   + YeL+v+A D+       g ++ls
   mKIAA1313   441 IDQVNGE----VRTTRTFNENSK--PSYELIVVAHDH-------GKTSLS 477  

                   statvtitVl<-*
                   + a v i +    
   mKIAA1313   478 ASALVLIYLS    487  

zf-HIT: domain 1 of 1, from 523 to 553: score 8.7, E = 0.62
                   *->prvfCvvPvCegnegkYkCpkCgvpyCSLrCyk<-*
                       + +C+    +++ ++Y+C++C + +C L+C+    
   mKIAA1313   523    VAIKCK--RDNKEIRTYNCSNCLTITCLLGCFI    553  

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