hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm12339/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1312 ( 276 res) mpm12339 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TSP1 Thrombospondin type 1 repeats 120.2 2.3e-31 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TSP1 1/4 11 65 .. 1 66 [] 36.6 3.3e-06 TSP1 2/4 67 121 .. 1 66 [] 35.1 9.8e-06 TSP1 3/4 153 205 .. 1 66 [] 31.1 0.00016 TSP1 4/4 206 261 .. 1 66 [] 41.8 9.4e-08 Alignments of top-scoring domains: TSP1: domain 1 of 4, from 11 to 65: score 36.6, E = 3.3e-06 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg w +++W+pCS +tCG+G +r+R+ s c + ++ ++ mKIAA1312 11 WR-FGSWTPCS-ATCGKG-----TRMRYVS----CRDEDGS--VADE 44 epCs......EtrpCntqpnLqpCp<-* + C + +++ +++C++ pC mKIAA1312 45 SACAtlpkpvAKEECSVT----PCG 65 TSP1: domain 2 of 4, from 67 to 121: score 35.1, E = 9.8e-06 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg w + WS+CS vtCG G tR+ vc++ + mKIAA1312 67 WKALD-WSSCS-VTCGQG-----KATRQV----VCVNYSDH--VIDR 100 epCs......EtrpCntqpnLqpCp<-* ++C+++ ++ ++C+++ pCp mKIAA1312 101 SECDpdyipeTDQDCSMS----PCP 121 TSP1: domain 3 of 4, from 153 to 205: score 31.1, E = 0.00016 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg w +++W++CS tC gG ++R+ vc + ++ mKIAA1312 153 WR-TGPWGACS-STCAGG-----SQRRVV----VCQDENGYTA---- 184 epCs......EtrpCntqpnLqpCp<-* +C ++ +++E+r+C+ pCp mKIAA1312 185 NDCVerikpdEQRACESG----PCP 205 TSP1: domain 4 of 4, from 206 to 261: score 41.8, E = 9.4e-08 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg ++ ++W++C+ + CGgG +rtR vc ++++ ++++ mKIAA1312 206 QWAYGSWGECT-KLCGGG-----MRTRLV----VCQRANGD--RFPD 240 epCs......EtrpCntqpnLqpCp<-* +C+ +++++ ++Cnt+ +Cp mKIAA1312 241 LSCEvldkptDREQCNTH----ACP 261 //