hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm12339/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1312 ( 276 res) mpm12339 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TSP_1 Thrombospondin type 1 domain 64.0 3.2e-15 4 Keratin_B2 Keratin, high sulfur B2 protein -72.5 0.47 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TSP_1 1/4 9 64 .. 1 55 [] 22.9 0.00074 TSP_1 2/4 65 120 .. 1 55 [] 24.2 0.00052 Keratin_B2 1/1 3 129 .. 1 177 [] -72.5 0.47 TSP_1 3/4 153 204 .. 1 55 [] 23.5 0.00063 TSP_1 4/4 207 260 .. 1 55 [] 17.7 0.0031 Alignments of top-scoring domains: TSP_1: domain 1 of 4, from 9 to 64: score 22.9, E = 0.00074 *->spW..seWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.. ++W+ + W+pCS TCGkG+r+R+ +c + +g+ + + mKIAA1312 9 TQWrfGSWTPCSATCGKGTRMRYVSCRDE----DGSVADESACATlp 51 ..leteaCdmmdkC<-* +++ e C ++ +C mKIAA1312 52 kpVAKEEC-SVTPC 64 TSP_1: domain 2 of 4, from 65 to 120: score 24.2, E = 0.00052 *->spWse..WSpCSVTCGkGirtRqRvcnspaPqk.kggepCtgdvqel ++W +WS+CSVTCG G tRq vc++ + + + C d+++ mKIAA1312 65 GQWKAldWSSCSVTCGQGKATRQVVCVNYSD-HvIDRSECDPDYIP- 109 etea.CdmmdkC<-* et +C +m +C mKIAA1312 110 ETDQdC-SMSPC 120 Keratin_B2: domain 1 of 1, from 3 to 129: score -72.5, E = 0.47 *->qtScCGfptCStlgtrPsCGsscCQP......sCCe...SCCQpsCc + S ++ + +++ C c + ++ + sC ++++S +s c mKIAA1312 3 AQSIPRT-QWRFGSW-TPCSATCGKGtrmryvSCRDedgSVADESAC 47 qpSCCqPtcsqtscCqPtcfqssCCrPsCcqTSCCqPtCcqsssCqtgCg + P +P++ C T+C q ++ ssC +Cg mKIAA1312 48 AT---LP--------KPVAKEE------CSVTPCGQWKALDWSSCSVTCG 80 igGsiGyGQeGsSGAvScrirWCRPdCrvegtClPpCCvvsCtaPTCCqp g + ++Cv + mKIAA1312 81 QG----------------------------KATRQVVCVN--YSD----- 95 vsaQasCCRPsCqPyCgqsCCRPaCccsvtCtrTccePc<-* + s C P P + q C C T + mKIAA1312 96 HVIDRSECDPDYIPETDQDCSMSPCPQW-----TGLAHP 129 TSP_1: domain 3 of 4, from 153 to 204: score 23.5, E = 0.00063 *->spWseWSpCSVTCGkGirtRqRvcnspaPqk.kggepCtgdvqelet +++W +CS TC +G++ R+ vc+ + ++ ++C++ + e mKIAA1312 153 WRTGPWGACSSTCAGGSQRRVVVCQDE---NgYTANDCVERIKPDEQ 196 eaCdmmdkC<-* +aC + +C mKIAA1312 197 RAC-ESGPC 204 TSP_1: domain 4 of 4, from 207 to 260: score 17.7, E = 0.0031 *->spWseWSpCSVTCGkGirtRqRvcnspaPqk.kggepCtgdvqe..l + W +C++ CG+G+rtR vc+ +a ++ +++ +v +++ mKIAA1312 207 WAYGSWGECTKLCGGGMRTRLVVCQ-RA--NgDRFPDLSCEVLDkpT 250 eteaCdmmdkC<-* + e C + + C mKIAA1312 251 DREQC-NTHAC 260 //