hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm08358/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1311  ( 735 res)   mpm08358

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or     15.7     0.0041   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM_1      1/1     277   344 ..     1    74 []    15.7   0.0041

Alignments of top-scoring domains:
RRM_1: domain 1 of 1, from 277 to 344: score 15.7, E = 0.0041
                   *->lfVgNLppdtte.edLkdlFskfGpiesikivrDttretgrskGfaF
                      l V+ +p++++   +L ++FskfG i++i++  +           a 
   mKIAA1311   277    LEVKKIPQELNNiTKLNEHFSKFGTIVNIQVAFK------GDPEAAL 317  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   +++ + e+A+kA++   +  l++r +rv   
   mKIAA1311   318 IQYLTNEEARKAIS-STEAVLNNRFIRV    344  

//