hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03705/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1309  ( 653 res)   mbh03705

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac        78.0    1.2e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      90   189 ..     1   114 []    78.0  1.2e-18

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 90 to 189: score 78.0, E = 1.2e-18
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDvtl+ g+   +d      +++  H++  a+    S+yFka+f+++
   mKIAA1309    90    CDVTLMPGD---TD----DAYPV--HRVMMASA---SDYFKAMFTGg 124  

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                    ++++   i l +      vs   +r +++f+Yt kl+l+++   ++++ 
   mKIAA1309   125 mkeqelmcIKLHG------VSRVGLRKIIDFIYTaKLSLNMD---TLQDT 165  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   Le+A+fl    qi ++ + C+ fl++     
   mKIAA1309   166 LEAASFL----QILpVLDFCKVFLISGV    189  

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