hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh03705/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1309 ( 653 res) mbh03705 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kelch_1 Kelch motif 242.1 7.6e-69 6 BACK BTB And C-terminal Kelch 117.3 3e-31 1 Kelch_2 Kelch motif 117.0 3.4e-31 6 BTB BTB/POZ domain 103.3 4.8e-27 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 80 189 .. 1 135 [] 103.3 4.8e-27 BACK 1/1 194 295 .. 1 103 [] 117.3 3e-31 Kelch_1 1/6 327 374 .. 1 45 [] 11.9 1.2 Kelch_2 1/6 327 374 .. 1 54 [] 7.1 29 Kelch_1 2/6 376 426 .. 1 45 [] 58.6 1.3e-13 Kelch_2 2/6 376 426 .. 1 54 [] 25.1 0.0016 Kelch_1 3/6 428 473 .. 1 45 [] 54.4 2.4e-12 Kelch_2 3/6 428 473 .. 1 54 [] 9.0 16 Kelch_1 4/6 475 520 .. 1 45 [] 45.6 1.1e-09 Kelch_2 4/6 475 520 .. 1 54 [] 34.6 2.2e-06 Kelch_1 5/6 522 572 .. 1 45 [] 38.7 1.3e-07 Kelch_2 5/6 522 572 .. 1 54 [] 14.9 2 Kelch_1 6/6 574 621 .. 1 45 [] 37.4 3.3e-07 Kelch_2 6/6 574 621 .. 1 54 [] 27.0 0.00044 Alignments of top-scoring domains: BTB: domain 1 of 1, from 80 to 189: score 103.3, E = 4.8e-27 *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +++lr+ g lcDVtL+ gd + +++H++ a++S+YFka+ mKIAA1309 80 FDQLRLDGLLCDVTLMPGDT------DDAYPVHRVMMASASDYFKAM 120 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ftg+ ++e+ + i l +vs ++ +++fiYt++ls++ mKIAA1309 121 FTGG-----MKEQELMC--IKLHGVSRVGLRKIIDFIYTAKLSLN----- 158 PssckseenvedlLalAadllqipslvdkCeefliksl<-* +++++d L++A ++lqi + d C fli mKIAA1309 159 ------MDTLQDTLEAA-SFLQILPVLDFCKVFLISGV 189 BACK: domain 1 of 1, from 194 to 295: score 117.3, E = 3e-31 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie C+ + r+A +y ++e+ +++++f+l+nF++++++ EFl L++e+L + mKIAA1309 194 CVEVGRIANTYHLTEVDKYVNSFVLKNFAALLSTGEFLKLPFERLAF 240 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky +Lss++L ++E ++f+A +rW++ +++ R + +++L++++R+pL++p++ mKIAA1309 241 VLSSNSLKRCTELDLFKATCRWLRLEEP-RMDVAAKLMKNIRFPLMTPQE 289 Llevve<-* L ++v+ mKIAA1309 290 LINYVQ 295 Kelch_1: domain 1 of 6, from 327 to 374: score 11.9, E = 1.2 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm + ++ + ++ GG+ ++ + ++ +YD +t++W+ l++m mKIAA1309 327 QSDRTAIRSDTTRLVTLGGVLRqqlVVSKELRMYDEKTHEWKSLAPM 373 p<-* mKIAA1309 374 D 374 Kelch_2: domain 1 of 6, from 327 to 374: score 7.1, E = 29 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW ++ ++a+++ +l+ GG+ +s l+ +d++t++W mKIAA1309 327 QSDRTAIRSDTTRLVTLGGV------LRQQLVVSKELRMYDEKTHEW 367 eklpalp<-* + l++++ mKIAA1309 368 KSLAPMD 374 Kelch_1: domain 2 of 6, from 376 to 426: score 58.6, E = 1.3e-13 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl pR+ +g++v+++ +Yv+GG+++ ++++++++++v+++Dp+ n+W ++ mKIAA1309 376 PRYQHGIAVIGNFLYVVGGQSNydtkgkTAVDTVFRFDPRYNKWIQV 422 psmp<-* +s++ mKIAA1309 423 ASLN 426 Kelch_2: domain 2 of 6, from 376 to 426: score 25.1, E = 0.0016 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pry+h ++v+g+ lyvvGG + ++ g + +++ ++dp+ n+W mKIAA1309 376 PRYQHGIAVIGNFLYVVGGQ---SNYDTKGKTAVDTVFRFDPRYNKW 419 eklpalp<-* +++l mKIAA1309 420 IQVASLN 426 Kelch_1: domain 3 of 6, from 428 to 473: score 54.4, E = 2.4e-12 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+++ +l+g +Y++GG++ l +ve+Y+p+tn+Wt+++ m+ mKIAA1309 428 KRTFFHLSALKGFLYAVGGRNAaGELPTVECYNPRTNEWTYVAKMN 473 -* mKIAA1309 - - Kelch_2: domain 3 of 6, from 428 to 473: score 9.0, E = 16 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r ++ + g ly vGG+ n + + ++ +++p+tn+W mKIAA1309 428 KRTFFHLSALKGFLYAVGGR--------NAAGELPTVECYNPRTNEW 466 eklpalp<-* ++++++ mKIAA1309 467 TYVAKMN 473 Kelch_1: domain 4 of 6, from 475 to 520: score 45.6, E = 1.1e-09 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< p +g++ +v++g++Y+ GG + +++ + ++Dp+t++Wt+ ++m+ mKIAA1309 475 PHYGHAGTVYGGVMYISGGITHdTFQKELMCFDPDTDKWTQKAPMT 520 -* mKIAA1309 - - Kelch_2: domain 4 of 6, from 475 to 520: score 34.6, E = 2.2e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW p+y+ha +v+gg +y++GG+ d ++ l+++dp+t +W mKIAA1309 475 PHYGHAGTVYGGVMYISGGI--------THDTFQKELMCFDPDTDKW 513 eklpalp<-* + +++ mKIAA1309 514 TQKAPMT 520 Kelch_1: domain 5 of 6, from 522 to 572: score 38.7, E = 1.3e-07 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl R ++++++++++YviGG +++++ + s+e+Y+p ++Wt++ mKIAA1309 522 VRGLHCMCTVGDRLYVIGGNHFrgtsdyDDVLSCEYYSPILDQWTPI 568 psmp<-* +sm mKIAA1309 569 ASML 572 Kelch_2: domain 5 of 6, from 522 to 572: score 14.9, E = 2 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r+ h ++++g++lyv+GG + rgt + d+++s ++ p +W mKIAA1309 522 VRGLHCMCTVGDRLYVIGGN--HFRGTSDYDDVLS-CEYYSPILDQW 565 eklpalp<-* ++++++ mKIAA1309 566 TPIASML 572 Kelch_1: domain 6 of 6, from 574 to 621: score 37.4, E = 3.3e-07 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm s +gv+v+++kiYv+GGy+ +++ + v +YDpe+n+W+k+ ++ mKIAA1309 574 GQSDVGVAVFENKIYVVGGYSWnnrCMVEIVQKYDPEKNEWHKVFDL 620 p<-* p mKIAA1309 621 P 621 Kelch_2: domain 6 of 6, from 574 to 621: score 27.0, E = 0.00044 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +++ + ++v ++k+yvvGG+ + n+ + ++ +dpe+n+W mKIAA1309 574 GQSDVGVAVFENKIYVVGGY------SWNNRCMVEIVQKYDPEKNEW 614 eklpalp<-* +k+ +lp mKIAA1309 615 HKVFDLP 621 //