hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg04314/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1306  ( 1347 res)   mbg04314

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ANK      ankyrin repeats                                155.4    5.7e-42   6
SAM      Sterile alpha motif.                            59.7    3.8e-13   1
SH3      Src homology 3 domains                          32.4    6.1e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ANK        1/6      35    64 ..     1    30 []    30.9  0.00018
ANK        2/6      68    97 ..     1    30 []    20.0     0.34
ANK        3/6     101   130 ..     1    30 []    30.3  0.00027
ANK        4/6     134   163 ..     1    30 []    17.4        2
ANK        5/6     175   204 ..     1    30 []    42.8  4.7e-08
ANK        6/6     207   236 ..     1    30 []    19.2     0.57
SH3        1/1     271   333 ..     1    58 []    32.4  6.1e-05
SAM        1/1     458   525 ..     1    67 []    59.7  3.8e-13

Alignments of top-scoring domains:
ANK: domain 1 of 6, from 35 to 64: score 30.9, E = 0.00018
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dG+++LH+Aa ngn e++ lLl++ a +++   
   mKIAA1306    35    DGFSALHHAALNGNTELISLLLEAQAAVDI    64   

ANK: domain 2 of 6, from 68 to 97: score 20.0, E = 0.34
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+ pLH+Aa  g++e +kl l++g  +n+   
   mKIAA1306    68    KGMRPLHYAAWQGRKEPMKLVLKAGSAVNV    97   

ANK: domain 3 of 6, from 101 to 130: score 30.3, E = 0.00027
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+ pLHlAa++g+++v ++Ll++  ++ +   
   mKIAA1306   101    EGHIPLHLAAQHGHYDVSEMLLQHQSNPCM    130  

ANK: domain 4 of 6, from 134 to 163: score 17.4, E = 2
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+TpL lA+e g++ vv+lLl+++    +   
   mKIAA1306   134    SGKTPLDLACEFGRVGVVQLLLSSNMCAAL    163  

ANK: domain 5 of 6, from 175 to 204: score 42.8, E = 4.7e-08
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G +pLHlAa+ng++++++lLl++g din    
   mKIAA1306   175    NGTSPLHLAAKNGHIDIIRLLLQAGIDINR    204  

ANK: domain 6 of 6, from 207 to 236: score 19.2, E = 0.57
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                         T+LH Aa  g  evv+lLld+g +  +   
   mKIAA1306   207    KSGTALHEAALCGKTEVVRLLLDSGINAQV    236  

SH3: domain 1 of 1, from 271 to 333: score 32.4, E = 6.1e-05
                   *->eyvvAlYDyea.qnedELsFkkGDiitvleksddgWweGelnr....
                       +v+A  Dy  + +   L +k+GDiitvle++ dg w+G +++++++
   mKIAA1306   271    LQVRATKDYCNnYDLTSLNVKAGDIITVLEQHPDGRWKGCIHDnrtg 317  

                   tGkeGlfPsnYVeeie<-*
                   + ++G+fPs+  e i    
   mKIAA1306   318 NDRVGYFPSSLGEAIV    333  

SAM: domain 1 of 1, from 458 to 525: score 59.7, E = 3.8e-13
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                        +    ++a WL  igl+qY + + +ng+   +++  ++ edL+e+
   mKIAA1306   458    SAsEGKANLAVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQEI 504  

                   GitllGhRkkIlsaiqklkeq<-*
                   Git+lGh+kk++ a++kl e    
   mKIAA1306   505 GITKLGHQKKLMLAVRKLAEL    525  

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