hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph02336/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1303  ( 373 res)   mph02336

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    89.1    5.4e-22   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7      50    88 ..     1    46 []     6.6       44
WD40       2/7      90   135 ..     1    46 []    11.5      7.4
WD40       3/7     143   189 ..     1    46 []     1.2  3.2e+02
WD40       4/7     192   232 ..     1    46 []    23.4    0.031
WD40       5/7     238   278 ..     1    46 []    17.2     0.91
WD40       6/7     284   319 ..     1    46 []    10.1       12
WD40       7/7     321   367 ..     1    46 []    19.1     0.46

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 50 to 88: score 6.6, E = 44
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                             l+   g    + v+f+p         ++a++++D+ i++W
   mKIAA1303    50    RlDDQIFLNRNPG--VPSVVKFHPFT------PCIAVADkDS-ICFW 87   

                   d<-*
                   d   
   mKIAA1303    88 D    88   

WD40: domain 2 of 7, from 90 to 135: score 11.5, E = 7.4
                   *->t.kllrtlkgHtge...spVtsvafspdggssdspnllasgs.Dgti
                      ++     +  H+g+++ ++Vt++ +    ++    +ll+++ +Dg i
   mKIAA1303    90    EkGEKLDYF-HNGNpryTRVTAMEYLNGQDC----SLLLTATdDGAI 131  

                   rlWd<-*
                   r+W+   
   mKIAA1303   132 RVWK    135  

WD40: domain 3 of 7, from 143 to 189: score 1.2, E = 3.2e+02
                   *->t.kllrtlkgHtge.....spVtsvafspdggssdspnllasgs.Dg
                      +++ +  ++g +++ ++++++   v++ +         ll s+++ +
   mKIAA1303   143    NpEMVTAWQGLSDMlpttrGAGMVVDWEQET------GLLMSSGdVR 183  

                   tirlWd<-*
                    +r+Wd   
   mKIAA1303   184 IVRIWD    189  

WD40: domain 4 of 7, from 192 to 232: score 23.4, E = 0.031
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                        + ++ +++g ++   Vts++ +++       +l+++g +Dg+ir+
   mKIAA1303   192    ReTKVQDIPtGADS--CVTSLSCDSHR------SLIVAGLgDGSIRV 230  

                   Wd<-*
                   +d   
   mKIAA1303   231 YD    232  

WD40: domain 5 of 7, from 238 to 278: score 17.2, E = 0.91
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +   ++t++ Ht+  +V       +      + +++s s +g +r++
   mKIAA1303   238    SeCRVMTYREHTA--WVVKAYLQKHP-----EGHIVSVSvNGDVRFF 277  

                   d<-*
                   d   
   mKIAA1303   278 D    278  

WD40: domain 6 of 7, from 284 to 319: score 10.1, E = 12
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + ++ ++ k      + t+++++p        nl+a+gs +    ++
   mKIAA1303   284    SvNVMQIVK------GLTALDIHPQA------NLIACGSmNQFTAIY 318  

                   d<-*
                   +   
   mKIAA1303   319 N    319  

WD40: domain 7 of 7, from 321 to 367: score 19.1, E = 0.46
                   *->t.kllrtlkgHtge.....spVtsvafspdggssdspnllasgs.Dg
                      +++l+  +k  +g  +++ ++++++af+p+        +la+gs+D 
   mKIAA1303   321    NgELINNIKYYDGFmgqrvGAISCLAFHPHW------PHLAVGSnDY 361  

                   tirlWd<-*
                    i +++   
   mKIAA1303   362 YISVYS    367  

//