hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02336/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1303  ( 373 res)   mph02336

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        65.9    8.3e-16   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7      52    88 ..     1    38 []     5.5       43
WD40       2/7      96   135 ..     1    38 []     8.5       18
WD40       3/7     152   189 ..     1    38 []     2.0  1.2e+02
WD40       4/7     195   232 ..     1    38 []    19.7    0.068
WD40       5/7     240   278 ..     1    38 []    10.4       11
WD40       6/7     283   319 ..     1    38 []     3.5       74
WD40       7/7     330   367 ..     1    38 []    18.3     0.19

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 52 to 88: score 5.5, E = 43
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + +  l+   +  + v+f+p   p++a +    +i+ Wd   
   mKIAA1303    52    DDQIFLnRNPGVPSVVKFHPF-TPCIAVADK-DSICFWD    88   

WD40: domain 2 of 7, from 96 to 135: score 8.5, E = 18
                   *->eclavl.gHtspVtcvafspd.sgpllasgSrDgtikiWd<-*
                      +  +  +     Vt++ +    +++ll+++ +Dg i++W+   
   mKIAA1303    96    DYFHNGnPRYTRVTAMEYLNGqDCSLLLTATDDGAIRVWK    135  

WD40: domain 3 of 7, from 152 to 189: score 2.0, E = 1.2e+02
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       +   l+   ++ + v++ ++   ll s+++ + ++iWd   
   mKIAA1303   152    GLSDMLpTTRGAGMVVDWEQE-TGLLMSSGDVRIVRIWD    189  

WD40: domain 4 of 7, from 195 to 232: score 19.7, E = 0.068
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +++ + +g  s Vt+++++ + ++l++ g  Dg+i+++d   
   mKIAA1303   195    KVQDIPtGADSCVTSLSCDSH-RSLIVAGLGDGSIRVYD    232  

WD40: domain 5 of 7, from 240 to 278: score 10.4, E = 11
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + + +++ Ht++V       ++  +++s S +g ++ +d   
   mKIAA1303   240    CRVMTYrEHTAWVVKAYLQKHPEGHIVSVSVNGDVRFFD    278  

WD40: domain 6 of 7, from 283 to 319: score 3.5, E = 74
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      e + v +   ++ t+++++p   +l+a+gS +    i++   
   mKIAA1303   283    ESVNVMqIV-KGLTALDIHPQ-ANLIACGSMNQFTAIYN    319  

WD40: domain 7 of 7, from 330 to 367: score 18.3, E = 0.19
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                            +   ++++c+af+p+  p+la gS D  i +++   
   mKIAA1303   330    YYDGFMgQRVGAISCLAFHPH-WPHLAVGSNDYYISVYS    367  

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