hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg04788/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1302  ( 1198 res)   mbg04788

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
YD_repeat_2x YD_repeat_2x: YD repeat (two copies)        82.7    7.4e-21   7

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
YD_repeat_2x   1/7      41    82 ..     1    42 []    11.1       10
YD_repeat_2x   2/7     105   146 ..     1    42 []    28.6  0.00015
YD_repeat_2x   3/7     316   356 ..     1    42 []    19.7    0.071
YD_repeat_2x   4/7     357   396 ..     1    42 []     1.1  1.3e+03
YD_repeat_2x   5/7     625   664 ..     1    42 []    10.9       11
YD_repeat_2x   6/7     700   742 ..     1    42 []    13.1        4
YD_repeat_2x   7/7     747   788 ..     1    42 []     4.1    3e+02

Alignments of top-scoring domains:
YD_repeat_2x: domain 1 of 7, from 41 to 82: score 11.1, E = 10
                   *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-*
                      y ++g+++++td +g+ + +  d+ g  +    pdg++  ++   
   mKIAA1302    41    YTGDGDITHITDNNGNMVNVRRDSTGMPLWLVVPDGQVYWVT    82   

YD_repeat_2x: domain 2 of 7, from 105 to 146: score 28.6, E = 0.00015
                   *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-*
                      +++ g l++  +++g+tt y+yd++grl+ +t p g+++s+    
   mKIAA1302   105    HGNSGLLATKSNENGWTTFYEYDSFGRLTNVTFPTGQVSSFR    146  

YD_repeat_2x: domain 3 of 7, from 316 to 356: score 19.7, E = 0.071
                   *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-*
                      y++ g+++g+        r++yd+agr++++  +dg+ +s++   
   mKIAA1302   316    YSPGGHIAGIQRGIM-SERMEYDQAGRITSRIFADGKMWSYT    356  

YD_repeat_2x: domain 4 of 7, from 357 to 396: score 1.1, E = 1.3e+03
                   *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-*
                      y     +l+ + +    + +++d  +rl+++t+p+  ++ le   
   mKIAA1302   357    YLEKSMVLHLHSQRQ--YIFEFDKNDRLSSVTMPNVARQTLE    396  

YD_repeat_2x: domain 5 of 7, from 625 to 664: score 10.9, E = 11
                   *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-*
                      yda+g+l ++   d   +ry+yd  g+l  + +  g+s +l+   
   mKIAA1302   625    YDADGQLQTVSINDKPLWRYSYDLNGNL--HLLSPGNSARLT    664  

YD_repeat_2x: domain 6 of 7, from 700 to 742: score 13.1, E = 4
                   *->ydaagrll.gstdpdgtttrytydaagrlveetdpdggstsle<-*
                      y+ ag l+++++ ++g+ +ry yd++gr+v+  +  ++  ++    
   mKIAA1302   700    YNSAGLLIkAYNRASGWSVRYRYDGLGRRVSSKSSHSHHLQFF    742  

YD_repeat_2x: domain 7 of 7, from 747 to 788: score 4.1, E = 3e+02
                   *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-*
                       ++      +++ + ++t + yd +g+l ++ +  g+  +++   
   mKIAA1302   747    TNPTKVTHLYNHSSSEITSLYYDLQGHLFAMELSSGDEFYIA    788  

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