hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg04788/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1302  ( 1198 res)   mbg04788

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
RHS_repeat RHS Repeat                                    59.2      9e-14   7

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
RHS_repeat   1/7      41    78 ..     1    44 []    14.8      2.1
RHS_repeat   2/7     104   142 ..     1    44 []    15.5      1.2
RHS_repeat   3/7     336   371 ..     1    44 []     3.2  1.2e+02
RHS_repeat   4/7     421   481 ..     1    44 []     2.3  1.5e+02
RHS_repeat   5/7     599   641 ..     1    44 []     5.3       62
RHS_repeat   6/7     646   680 ..     1    44 []    11.5      9.9
RHS_repeat   7/7     700   753 ..     1    44 []    22.3    0.012

Alignments of top-scoring domains:
RHS_repeat: domain 1 of 7, from 41 to 78: score 14.8, E = 2.1
                   *->YDadGrLtavtdpsggvgttyrYDaaGrltaltlttstdagGrt<-*
                      Y  dG++t +td++g+ +   r D+ G++  l       ++G++   
   mKIAA1302    41    YTGDGDITHITDNNGNMV-NVRRDSTGMPLWL-----VVPDGQV    78   

RHS_repeat: domain 2 of 7, from 104 to 142: score 15.5, E = 1.2
                   *->YDadGrLtavtdpsggvgtt.yrYDaaGrltaltlttstdagGrt<-
                      Y  +  L+a+  + +g + t y+YD++Grlt +     t + G++  
   mKIAA1302   104    YHGNSGLLATKSNENGWT-TfYEYDSFGRLTNV-----TFPTGQV   142  

                   *
                    
   mKIAA1302     -   -    

RHS_repeat: domain 3 of 7, from 336 to 371: score 3.2, E = 1.2e+02
                   *->YDadGrLtavtdpsggvgttyrYDaaGrltaltlttstdagGrt<-*
                      YD +Gr+t+ + ++g  +  y+Y +  ++ +l     +  +  +   
   mKIAA1302   336    YDQAGRITSRIFADGKMW-SYTYLEKSMVLHL-----HSQR--Q    371  

RHS_repeat: domain 4 of 7, from 421 to 481: score 2.3, E = 1.5e+02
                   *->YDadGrLta.....................vtdpsggvgttyrYD.a
                      + +dG+L+ +   +++++   + ++ ++  +t ++++++  ++YD+ 
   mKIAA1302   421    FTEDGHLLHtfylgtgrrviykygklsklaETLYDTTKV-SFTYDeT 466  

                   aGrltaltlttstdagGrt<-*
                   aG+l ++   +    +G t   
   mKIAA1302   467 AGMLKTV---N-LQNEGFT    481  

RHS_repeat: domain 5 of 7, from 599 to 641: score 5.3, E = 62
                   *->YDadGrLta...vt.dpsggvgtt.yrYDaaGrltaltlttstdagG
                      YD  Gr+++++ + ++++++++ ++y+YDa G+l ++        ++
   mKIAA1302   599    YDNMGRVVKkelKVgPYANTTR-YsYEYDADGQLQTV-----SINDK 639  

                   rt<-*
                        
   mKIAA1302   640 PL    641  

RHS_repeat: domain 6 of 7, from 646 to 680: score 11.5, E = 9.9
                   *->YDadGrLtavtdpsggvgtt.yrYDaaGrltaltlttstdagGrt<-
                      YD +G+L   ++ + +++ t++rYD ++r+t+l         G +  
   mKIAA1302   646    YDLNGNLHLLSPGNSARL-TpLRYDLRDRITRL---------GDV   680  

                   *
                    
   mKIAA1302     -   -    

RHS_repeat: domain 7 of 7, from 700 to 753: score 22.3, E = 0.012
                   *->YDadGrLtavt.dpsggvgttyrYDaaGrlt...............a
                      Y+++G L++ ++ +sg ++ +yrYD++Gr+++++++++++ +    +
   mKIAA1302   700    YNSAGLLIKAYnRASGWSV-RYRYDGLGRRVssksshshhlqffyaD 745  

                   ltlttstdagGrt<-*
                   l     t++ ++t   
   mKIAA1302   746 L-----TNPTKVT    753  

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