hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mek/mek01601/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1299  ( 306 res)   mek01601

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       PH domain                                       52.5    9.1e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1     161   290 ..     1    92 []    52.5  9.1e-12

Alignments of top-scoring domains:
PH: domain 1 of 1, from 161 to 290: score 52.5, E = 9.1e-12
                   *->vikeGwLlkkg.........................gkkswkkRyfv
                      + +e  L+ +g ++  +++ + +++++  + +++++g ++w+k+ + 
   mKIAA1299   161    IQREELLSFMGaeeaapdpagvgrgggaagltsgggGQPQWQKCRLL 207  

                   Lfn.......dvLlyykdkk.kkpkgsipLsgi.qvekvpdn...krknc
                   L+++++++++++L+++ ++k ++p+ sip s+i+ v+++++ + ++r+n+
   mKIAA1299   208 LRSegeggggSRLEFFVPPKaSRPRLSIPCSTItDVRTATALempDRENT 257  

                   Feirt.dretlllqaeseeerkeWvkaiqsair<-*
                   F+++ +++ +++l+++++ + k Wv++iq++++   
   mKIAA1299   258 FVVKVeGPSEYILETSDALHVKAWVSDIQECLS    290  

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