hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01232/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1296  ( 1304 res)   mfj01232

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3      Src homology 3 domains                         227.2    1.4e-63   3
Sorb     Sorbin homologous domain                       105.4    6.6e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sorb       1/1     216   262 ..     1    55 []   105.4  6.6e-27
SH3        1/3    1066  1121 ..     1    58 []    76.0  4.6e-18
SH3        2/3    1140  1197 ..     1    58 []    70.9  1.6e-16
SH3        3/3    1246  1303 ..     1    58 []    82.2  6.2e-20

Alignments of top-scoring domains:
Sorb: domain 1 of 1, from 216 to 262: score 105.4, E = 6.6e-27
                   *->vrnvdypgivpvDEsGIPlasPrSsveRpkDmSQWYrtMFKQIHrkg
                      vr+++++++v++DE+GIPl+    ++eR+kD   WY+tMFKQIH+++
   mKIAA1296   216    VRSAQDLSDVSTDEVGIPLR----NTERSKD---WYKTMFKQIHKLN 255  

                   kpDddnDv<-*
                    +Ddd+Dv   
   mKIAA1296   256 -RDDDSDV    262  

SH3: domain 1 of 3, from 1066 to 1121: score 76.0, E = 4.6e-18
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                      + ++A++D++aq+  EL+++kGD++++ +++d++W+eGe++  G++G
   mKIAA1296  1066    RPARAKFDFKAQTLKELPLQKGDVVYIYRQIDQNWYEGEHH--GRVG 1110 

                   lfPsnYVeeie<-*
                   +fP +Y+e+++   
   mKIAA1296  1111 IFPRTYIELLP    1121 

SH3: domain 2 of 3, from 1140 to 1197: score 70.9, E = 1.6e-16
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                      ++++A++++++++  E+sF+kG+ it+l+++d++W+eG++ +t ++G
   mKIAA1296  1140    GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQG 1186 

                   lfPsnYVeeie<-*
                   +fP +YV +++   
   mKIAA1296  1187 IFPITYVDVLK    1197 

SH3: domain 3 of 3, from 1246 to 1303: score 82.2, E = 6.2e-20
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                      + ++AlY+y +qn+dEL ++ GDi+ v ek+ddgW+ G+ +rt + G
   mKIAA1296  1246    CSYQALYSYVPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTRQFG 1292 

                   lfPsnYVeeie<-*
                    fP+nYV+++    
   mKIAA1296  1293 TFPGNYVKPLY    1303 

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