hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj01232/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1296 ( 1304 res) mfj01232 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SH3_1 SH3 domain 180.7 2.4e-50 3 Sorb Sorbin homologous domain 127.9 1.8e-34 1 SH3_2 Variant SH3 domain 119.9 4.8e-32 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Sorb 1/1 216 261 .. 1 50 [] 127.9 1.8e-34 SH3_2 1/3 1067 1120 .. 1 69 [] 54.6 2.1e-12 SH3_1 1/3 1066 1120 .. 1 58 [] 58.0 2.1e-13 SH3_1 2/3 1140 1196 .. 1 58 [] 58.8 1.2e-13 SH3_2 2/3 1141 1196 .. 1 69 [] 31.5 2e-05 SH3_1 3/3 1246 1302 .. 1 58 [] 64.1 2.9e-15 SH3_2 3/3 1247 1302 .. 1 69 [] 34.2 2.9e-06 Alignments of top-scoring domains: Sorb: domain 1 of 1, from 216 to 261: score 127.9, E = 1.8e-34 *->vkaaqdlsivsvDEvGIPtAlRtTvdRsKDWYKTMFKQIHklnkPDd v++aqdls+vs+DEvGIP lR+T +RsKDWYKTMFKQIHkln+ Dd mKIAA1296 216 VRSAQDLSDVSTDEVGIP--LRNT-ERSKDWYKTMFKQIHKLNR-DD 258 DsD<-* DsD mKIAA1296 259 DSD 261 SH3_2: domain 1 of 3, from 1067 to 1120: score 54.6, E = 2.1e-12 *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl ++ra +d++a + e L l+kGdvv+++ + d +w++ mKIAA1296 1067 PARAKFDFKA-QTLKE------LPLQKGDVVYIY----RQIDQNWYE 1102 geslggGrrrRGlvPssaveel<-* ge +Gr+ G +P++++e l mKIAA1296 1103 GEH--HGRV--GIFPRTYIELL 1120 SH3_1: domain 1 of 3, from 1066 to 1120: score 58.0, E = 2.1e-13 *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkgrlkgtgGke + ++A++D++a++ EL+++kGDv+++ + d +W++g+ + G++ mKIAA1296 1066 RPARAKFDFKAQTLKELPLQKGDVVYIYRQIDQNWYEGEHH---GRV 1109 GliPsNYVepv<-* G++P +Y+e+ mKIAA1296 1110 GIFPRTYIELL 1120 SH3_1: domain 2 of 3, from 1140 to 1196: score 58.8, E = 1.2e-13 *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkgrlkgtgGke ++A++ +++ + E+sF+kG+ it+l ++d++W++gr gt+ ++ mKIAA1296 1140 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTS-RQ 1185 GliPsNYVepv<-* G++P +YV+ mKIAA1296 1186 GIFPITYVDVL 1196 SH3_2: domain 2 of 3, from 1141 to 1196: score 31.5, E = 2e-05 *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl ++a +++++ d++ e+s++kG+ + ++ + d++w++ mKIAA1296 1141 EAIAKFNFNG--DTQV-----EMSFRKGERITLL----RQVDENWYE 1176 geslggGrrrRGlvPssaveel<-* g+ g r G +P ++v +l mKIAA1296 1177 GRIPGTSRQ--GIFPITYVDVL 1196 SH3_1: domain 3 of 3, from 1246 to 1302: score 64.1, E = 2.9e-15 *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkgrlkgtgGke ++ALY Y+++++dEL ++ GD++ v ek ddgW g + +t+ ++ mKIAA1296 1246 CSYQALYSYVPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTR-QF 1291 GliPsNYVepv<-* G +P NYV p mKIAA1296 1292 GTFPGNYVKPL 1302 SH3_2: domain 3 of 3, from 1247 to 1302: score 34.2, E = 2.9e-06 *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl ++a+ +yv+ ++ +e L l+ Gd+v v +k ddgw mKIAA1296 1247 SYQALYSYVP-QNDDE------LELRDGDIVDVM----EKCDDGWFV 1282 geslgg..GrrrRGlvPssaveel<-* g+s +++++ G +P ++v++l mKIAA1296 1283 GTS--RrtRQF--GTFPGNYVKPL 1302 //