hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj39015/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1295  ( 91 res)   mfj39015

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SH3_1    SH3 domain                                      24.9    0.00044   1
SH3_2    Variant SH3 domain                              21.5       0.02   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH3_1      1/1      33    90 ..     1    58 []    24.9  0.00044
SH3_2      1/1      34    90 ..     1    69 []    21.5     0.02

Alignments of top-scoring domains:
SH3_1: domain 1 of 1, from 33 to 90: score 24.9, E = 0.00044
                   *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkgrlkgtgG..
                        +vA   +e+ e+   sF++G v++v ek+ +gWW++++++  G +
   mKIAA1295    33    SLYVAVANFEGDEDTS-SFQEGTVFEVREKNSSGWWFCQVLS--Gap 76   

                   .keGliPsNYVepv<-*
                   + eG+iPsNY++++   
   mKIAA1295    77 sWEGWIPSNYLRKK    90   

SH3_2: domain 1 of 1, from 34 to 90: score 21.5, E = 0.02
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl
                      +++a+ ++++  d++        s+++G v++v     +k++ gww+
   mKIAA1295    34    LYVAVANFEG--DEDT------SSFQEGTVFEVR----EKNSSGWWF 68   

                   geslgg..GrrrRGlvPssaveel<-*
                   + +l+g +  +  G++Ps+++++    
   mKIAA1295    69 CQVLSGapSWE--GWIPSNYLRKK    90   

//