hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbk/mbk00773/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1293  ( 376 res)   mbk00773

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
polyprenyl_synt Polyprenyl synthetase                   393.7   1.8e-114   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
polyprenyl_synt   1/1      67   339 ..     1   285 []   393.7 1.8e-114

Alignments of top-scoring domains:
polyprenyl_synt: domain 1 of 1, from 67 to 339: score 393.7, E = 1.8e-114
                   *->llaamlyyllagGGKRiRPllvvlaaralGkevekldyevetetlla
                      +l+++l+y+ +gG K++R+l+vv a++ l +e++k+d +++ +++l+
   mKIAA1293    67    RLKEVLEYNALGG-KYNRGLTVVQAFQEL-VEPKKQD-AESLQRALT 110  

                   lAaaiEmiHtaSLvHDDlPaMDnsdlRRGkPTcHkkFGeavAILaGDaLl
                   +++++E++++++Lv DD+  MD s +RRG++ c+++ +  + ++++DaLl
   mKIAA1293   111 VGWCVELLQAFFLVSDDI--MDSSLTRRGQI-CWYQKPGIGLDAINDALL 157  

                   srAfqlladldsphvrperkliaiseLanavgaqGevgGQllDlesegkg
                   ++A ++++++   ++r++++++++ eL+ ++ +q+e+g Q+lDl ++++g
   mKIAA1293   158 LEASIYRLLKF--YCREQPYYLNLLELFLQSSYQTEIG-QTLDLMTAPQG 204  

                   evDLiditleeylrihryKTAaLSFeasvqlgaivAGadDeeeekaLkdf
                    vDL ++t+++y++i++yKTA++SF++++++++++AG+d+e+e+ ++ ++
   mKIAA1293   205 HVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANALKI 254  

                   grdlGlaFQIvDDiLDltgdteelGKpvGsDlqeGKsTlpvllaLegnPa
                   ++++G++FQ++DD+LDl+gd+  +GK  G+D+q++K++++v+++L +  a
   mKIAA1293   255 LMEMGEFFQVQDDYLDLFGDPSVTGKV-GTDIQDNKCSWLVVQCLLR--A 301  

                   reeqrkllreaieqklseaalqgvaltkalealaeyie<-*
                   +++qr++l+e+++qk+ e++++++al++al++  ++ +   
   mKIAA1293   302 SPQQRQILEENYGQKDPEKVARVKALYEALDLQSAFFK    339  

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