hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm06087/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1286  ( 649 res)   mpm06087

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BROMO    bromo domain                                   144.9    8.1e-39   1
PWWP     domain with conserved PWWP motif                98.8    6.3e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BROMO      1/1      91   199 ..     1   118 []   144.9  8.1e-39
PWWP       1/1     578   648 ..     1    84 []    98.8  6.3e-25

Alignments of top-scoring domains:
BROMO: domain 1 of 1, from 91 to 199: score 144.9, E = 8.1e-39
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      ++ +++++  ll++ l++l+++        + a +F+epv+ +e  v
   mKIAA1286    91    MELeLMPFTVLLRTTLDLLQEK--------DSAHIFAEPVSLSE--V 127  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   PDY + I kPMD++t+++kle++ Y++leeF++DfnL+++N+++YN +d+
   mKIAA1286   128 PDYLEFISKPMDFSTMRRKLESHLYHTLEEFEEDFNLIVTNCMKYNAKDT 177  

                   evykdAkkLeklfeeklkelpp<-*
                   +++++A++L++l  + l+++++   
   mKIAA1286   178 IFHRAAVRLRDLGGAILRHARR    199  

PWWP: domain 1 of 1, from 578 to 648: score 98.8, E = 6.3e-25
                   *->fkpGDlVwAKmkGFPwWPAlvvspketpsnirktgvviphpplevlk
                      ++p++lVwAK++G+P++PAl+++pk++++ ++++gv+ip+ppl+vlk
   mKIAA1286   578    LEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLK 624  

                   leeeaknkrkenlypVlFFgdkdtrawvsssklfPLt<-*
                   l+e+++ ++ e l+ VlFF++k+t                
   mKIAA1286   625 LGEQKQAEAGERLFLVLFFDNKRT-------------    648  

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