hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm06087/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1286  ( 649 res)   mpm06087

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Bromodomain Bromodomain                                 121.3    1.8e-32   1
PWWP        PWWP domain                                  42.7    8.2e-09   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Bromodomain   1/1      98   185 ..     1    92 []   121.3  1.8e-32
PWWP          1/1     577   649 .]     1    87 []    42.7  8.2e-09

Alignments of top-scoring domains:
Bromodomain: domain 1 of 1, from 98 to 185: score 121.3, E = 1.8e-32
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      +  ll+++l+ l+e++  a  f +pV  s  e+PDY e+I kPMD++
   mKIAA1286    98    FTVLLRTTLDLLQEKD-SAHIFAEPVSLS--EVPDYLEFISKPMDFS 141  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   T+++kl+++ Y ++leeF++DfnL+++N+++YN +d++++++A++   
   mKIAA1286   142 TMRRKLESHLY-HTLEEFEEDFNLIVTNCMKYNAKDTIFHRAAVR    185  

PWWP: domain 1 of 1, from 577 to 649: score 42.7, E = 8.2e-09
                   *->dfkpgDLVwAKmkGfpwWPAriisqketptsvrkklkrimTqeaksn
                      d+ p +LVwAK++G+p++PA+ii++k++++++ + +++i      + 
   mKIAA1286   577    DLEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPI-----PVP 618  

                   lykVlFFgdhktrawvskkklkPlldqdidkfkkdekrKg<-*
                    ++Vl +g  k+ a  + +    l        + d+kr +   
   mKIAA1286   619 PLDVLKLGEQKQ-AEAGERLFLVL--------FFDNKRTW    649  

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