hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07984/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1284  ( 821 res)   mbg07984

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      26.1      0.005   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1      66   148 ..     1    80 []    26.1    0.005

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 66 to 148: score 26.1, E = 0.005
                   *->gglGfsivg...............gifvssvvpGspAakaGrkslgl
                      + l   i  ++++ +++ ++ +++ ++v +++pG+ A k+G      
   mKIAA1284    66    EVLVGIIHQtkrswkrsakqadgeRLVVHGLLPGGSAMKSGQ----- 107  

                   LkvGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-
                   + vGDv+++VN+ ++v   t e + ++l + +g +   +v+Lt +     
   mKIAA1284   108 VLVGDVLVAVND-VDV---TSENIERVLSCIPGPM---QVKLTFENAY   148  

                   *
                    
   mKIAA1284     -   -    

//