hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01932/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1277  ( 1074 res)   mph01932

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DENN     DENN (AEX-3) domain                            302.1    6.7e-87   1
uDENN    uDENN domain                                   167.1    2.8e-46   1
dDENN    dDENN domain                                    82.6    7.9e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
uDENN      1/1     628   720 ..     1   108 []   167.1  2.8e-46
DENN       1/1     727   911 ..     1   231 []   302.1  6.7e-87
dDENN      1/1     962  1027 ..     1    81 []    82.6  7.9e-21

Alignments of top-scoring domains:
uDENN: domain 1 of 1, from 628 to 720: score 167.1, E = 2.8e-46
                   *->carLfDyfVvVgldkkpsglgPDelagdneylPellrqFPSKllahy
                      +++Lf+yfVvV+l+kk+         ++ +y+Pel++qFP+Kl++++
   mKIAA1277   628    ERQLFEYFVVVSLHKKQ---------AGAAYVPELTQQFPLKLEKSF 665  

                   kedhedepfdlksipkFCfPegldsvsvrevnalrdpqfFsFvLTdeDsk
                   k ++e+e++ lk+ip+FCfP+++d+++v+e+    ++++FsFvLT+eD++
   mKIAA1277   666 KFMREAEDQ-LKAIPQFCFPDAKDWAPVQEF----TSETFSFVLTGEDGS 710  

                   RtryGfCltfy<-*
                   R r+G+C++++   
   mKIAA1277   711 R-RFGYCRRLL    720  

DENN: domain 1 of 1, from 727 to 911: score 302.1, E = 6.7e-87
                   *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk
                      r+p+++C++Srl++f++F+k+L+e+++++++s+a+            
   mKIAA1277   727    RLPEVYCIVSRLGCFSLFSKILDEVEKRRGISPAL------------ 761  

                   srdtvwrvltgvlevLhdirElEslirnLlyeVplPapGktirvkvvvls
                                        +++l+r++++ +p+Pa Gkti vk+++++
   mKIAA1277   762 ---------------------VQPLMRSVME-APFPALGKTIIVKNFLPG 789  

                   sgvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlqLfaaaLl
                   sg        +++++l++pl+++le++d+++lF +L+v++++++fa++Ll
   mKIAA1277   790 SG--------TEVIELCRPLDSRLEHVDFESLFSSLSVRHLVSVFASLLL 831  

                   ErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLlsAEdvLc
                   Er+++f+++kls+Ls+cchA+vaL+YP++Wqh+yIPvLP++++   d++c
   mKIAA1277   832 ERRVIFIADKLSTLSKCCHAMVALIYPFSWQHTYIPVLPPAMI---DIVC 878  

                   APtPFlIGVhssffelvkdlpleidvvvVDLDtn<-*
                   +PtPFlIG++ss+++l ++lple +v+vVDL ++   
   mKIAA1277   879 SPTPFLIGLLSSSLPLLRELPLE-EVLVVDLIND    911  

dDENN: domain 1 of 1, from 962 to 1027: score 82.6, E = 7.9e-21
                   *->lddqvreaFLrfFNasllggYrnfLryprkapewegardevvtFqke
                      l + v+eaF+rfF ++++g+Y  fL+            +e+++ q+e
   mKIAA1277   962    LSEVVSEAFVRFF-VEIVGHYPLFLTS-----------GEERSLQRE 996  

                   aFLksrprssqraFlsrlletQAVemFaeFIeeR<-*
                   aF+k+++++s+r+Fl+ ++etQ    F +FI+eR   
   mKIAA1277   997 AFRKAVSSKSLRRFLEVFMETQ---TFRGFIQER    1027 

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