hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph00753/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1273  ( 518 res)   mph00753

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AAA      ATPases associated with a variety of cellula    33.0      4e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AAA        1/1     357   502 ..     1    92 []    33.0    4e-05

Alignments of top-scoring domains:
AAA: domain 1 of 1, from 357 to 502: score 33.0, E = 4e-05
                   *->pgevvllvGppGsGKTTlaralarllgp.gviyidge.......ggq
                        ++vl++GppG+GKT +a++la ++g +  i+  g+    +++g+ 
   mKIAA1273   357    LYRNVLMYGPPGTGKTLFAKKLALHSGMdYAIMTGGDvapmgreGVT 403  

                   rirlalalark....dvlllDEitslld......................
                    + ++++ a  ++++ +l++DE++++l+++  ++++  + + +++ ++  
   mKIAA1273   404 AMHKVFDWASTsrrgLLLFVDEADAFLRkratrrlkvaqfdygkkcseva 453  

                   .................vtviattn...dldpallrrrfdrrivllril<
                   ++ ++ ++++  ++    + +a + ++++l +a + +r+ + ++  +   
   mKIAA1273   454 qltegmsgreiaqlavaWQAMAYSSedgVLTEAMMDARVQDAVQQHQQK  502  

                   -*
                     
   mKIAA1273     -    -    

//