hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph00753/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1273  ( 518 res)   mph00753

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AAA      ATPase family associated with various cellul    12.1    0.00038   1
AAA_3    ATPase family associated with various cellul   -15.9       0.12   1
TolA     TolA protein                                  -143.8       0.19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TolA       1/1       2   341 ..     1   448 []  -143.8     0.19
AAA_3      1/1     360   493 ..     1   133 []   -15.9     0.12
AAA        1/1     360   517 ..     1   216 []    12.1  0.00038

Alignments of top-scoring domains:
TolA: domain 1 of 1, from 2 to 341: score -143.8, E = 0.19
                   *->keqndklkrAi.iISvvLHiiLial...........LilgSldetve
                        ++ + +r++++ S      L++++++++++++++L l    ++  
   mKIAA1273     2    PVRSAEGARSLqTMS-----WLFGIkgpkgegtgppLPLP--PAQPG 41   

                   pepgGeGggsvidAVmVDpgaVaqQynrlqqQkedaarkekktEPvvEEk
                   +e+gG+ g+        D     + +        + a k+          
   mKIAA1273    42 AEGGGDRGAG-------DRPSPKDKWSNFDPTGLERAAKA---------- 74   

                   PvePdqeRkkklqrqaeeleqkraaEq....erlKeLekerlqaqeaakk
                          ++ + + + e l +++ +Eq+ + e++ +L ke  +a e+ k 
   mKIAA1273    75 -----ARELEHSRHAKEALSLAQMQEQtlqlEQQSKL-KEYEAAVEQLK- 117  

                   qaEearkqaeeqqK.qaEEakakqakEaakaKaeAeaaKakeeaerkake
                     E+ r qaee++K++ EE ++ qa  +   K++    +  ++ +++   
   mKIAA1273   118 -SEQIRVQAEERRKtLTEETRQHQARAQYQDKLAR--QRYEDQLKQQQLL 164  

                   ekaaAaAakkAEeeakakaAAeAkkkAeaeaAelkkkakarEaaaAeAkk
                   +           ee   + ++e  +k+e         a+         ++
   mKIAA1273   165 N-----------EEN-LRKQEESVQKQE---------AIR--------RA 185  

                   kaeaEAkaKaaaeAeaKAkaEkAkAdaeAkaKAeaerkAdeeAAkeKAAA
                    +e E       e   K   E  + +aeA a A             KA+ 
   mKIAA1273   186 TVERE------MELRHKN--EMLRVEAEARARA-------------KADR 214  

                   EAakKAaaekeraaaaeakrKAAAEkaAaadqeaevdDifGsLssgkNap
                   E a+  + e+ r++aae  +         ++    ++ ++G+  ++  ++
   mKIAA1273   215 ENADIIR-EQIRLKAAEHRQTI-------LESIRTAGTLLGEGFRAFVTD 256  

                   kqGggAkGagaasadsGktkksGasGaevdqYagqiksaIqsrlldddsy
                        A  ag++               +v+ Y++            + s 
   mKIAA1273   257 WDKVTATVAGLTL-------------LAVGVYSAK----------NATSV 283  

                   aGKtCrvrikLapDGtdallisvksegGDpalCqAAlaAvAktakiPkpP
                   aG+   ++ +L+      l+    +++    +  A      ++ +  ++ 
   mKIAA1273   284 AGRY--IEARLGKPS---LVRETSRIS----VLEALRHP-IQVSRRLVSR 323  

                   sddaVYeklKninldfkl<-*
                    +da    + ++ l+      
   mKIAA1273   324 PQDALEGVILSPSLEARV    341  

AAA_3: domain 1 of 1, from 360 to 493: score -15.9, E = 0.12
                   *->HvLlegvPGlaKTllvkalAkaldlkfkRiQaFTpDLlPsDilGtev
                       vL+ g PG++KTl++k+lA + +++++       D+ P   +G e 
   mKIAA1273   360    NVLMYGPPGTGKTLFAKKLALHSGMDYAIMT--GGDVAP---MGREG 401  

                   ydektrefefkkGPvFanllLADEIN.....RappKtQsALLEa...MeE
                   + + ++ f+         ll  DE     ++Ra+ + + A ++ +++  E
   mKIAA1273   402 VTAMHKVFDWASTSRRGLLLFVDEADaflrkRATRRLKVAQFDYgkkCSE 451  

                   lrqVTvdgethkLpepFlVlATqNPieqeGtYpLPEAqlDRFll<-*
                   + q T + + +++ ++ +           G+  L EA +D  +    
   mKIAA1273   452 VAQLTEGMSGREIAQLAVAWQAMAYSSEDGV--LTEAMMDARVQ    493  

AAA: domain 1 of 1, from 360 to 517: score 12.1, E = 0.00038
                   *->gvLLyGPPGtGKTlLAkavAnelgvpfisisgselvskyvGesekrv
                      +vL+yGPPGtGKTl Ak +A ++g  + ++ g ++v+    e++++ 
   mKIAA1273   360    NVLMYGPPGTGKTLFAKKLALHSGMDYAIMTG-GDVAPMGREGVTAM 405  

                   ralfelArkslkkaaPspiiFIDEiDalapkRgd................
                   +++f+ A+ s   + +   +F+DE+Da+ +kR  ++ +  + + +++ ++
   mKIAA1273   406 HKVFDWASTS---RRGL-LLFVDEADAFLRKRATrrlkvaqfdygkkcse 451  

                   ....egdvssrvvnqLLtemDLerigfekhylrgsdvvDlsnvlviaaTN
                     + + ++s+r ++qL++ +                         +a + 
   mKIAA1273   452 vaqlTEGMSGREIAQLAVAWQ-----------------------AMAYSS 478  

                   rpdlldpaLlrpGRfdreievplPdeeerleIlkihlkkmplalcqelse
                     + l++a+++     ++  v     +++++ lk    ++p         
   mKIAA1273   479 EDGVLTEAMMD---ARVQDAVQQH--QQKMQWLK---VERP--------- 511  

                   lakdvdleelaeelArrtpgfsgadlaalcreAalralr<-*
                      d    +                                 
   mKIAA1273   512 ---DSQTNK------------------------------    517  

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