hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic25008/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1272  ( 467 res)   mic25008

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Rap_GAP  Rap/ran-GAP                                     79.3    7.7e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Rap_GAP    1/1     258   437 ..     1   192 []    79.3  7.7e-20

Alignments of top-scoring domains:
Rap_GAP: domain 1 of 1, from 258 to 437: score 79.3, E = 7.7e-20
                   *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth
                      ++ Ne +s a+++F  +LG  v L  + +   + GGL +++++TG++
   mKIAA1272   258    ILANERGSQAYEDFVAGLGWEVDLSTHCG---FMGGL-QRNGSTGQT 300  

                   svYttykdmeimFHVSTlLPytesdkqqLqrK.RHIGNDiVtIVFqesGe
                   + Y      e++FHVST +P    d   L +K RH+GND V IV+ e   
   mKIAA1272   301 APYYATSTVEVIFHVSTRMPSVSDDS--LTKKlRHLGNDEVHIVWSEHSR 348  

                   kpFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpk
                    ++  + I   F  V +i+ ++          +++t +  vp+fgp    
   mKIAA1272   349 -DYRRGIIPTAFGDVSIIIYPMKNHMF----FITITKKPEVPFFGPLFDG 393  

                   gavfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-*
                    +v+ k ++    + a  iNa  av       +  +  R+ +L+     
   mKIAA1272   394 AIVSGKLLP--SLICATCINASRAVKCLIPLYQSFYEERALYLEAI    437  

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