hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mej/mej00243/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1270  ( 736 res)   mej00243

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
tRNA-synt_2c tRNA synthetases class II (A)              109.3    7.5e-29   1
tRNA_SAD     Threonyl and Alanyl tRNA synthetase seco    40.9    2.9e-08   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
tRNA-synt_2c   1/1       1   377 [.     1   613 []   109.3  7.5e-29
tRNA_SAD       1/1     472   530 ..     1    60 []    40.9  2.9e-08

Alignments of top-scoring domains:
tRNA-synt_2c: domain 1 of 1, from 1 to 377: score 109.3, E = 7.5e-29
                   *->EIRqtFLdFFekkGHtvvpSsplvPrRnDPtLLFtNAGMnqFKpiFl
                                                                     
   mKIAA1270     -    ----------------------------------------------- -    

                   GgedPnsdkppynRAtnsQkCIRaGGKHNDLENVGkTaRHHTFFEMLGNF
                                                                     
   mKIAA1270     - -------------------------------------------------- -    

                   SFGyedkeDYFKeEAIefAWELLTSkvlgLpperLyvTVyedDdkaGLeP
                                                                     
   mKIAA1270     - -------------------------------------------------- -    

                   dgEAypiWekivGipeeRIlrfgdkDNFWemGDtdIKGkGPCGPCSEIfY
                                                    +                
   mKIAA1270     1 ---------------------------------Q---------------- 1    

                   DRGeeiggrpagspveFgDadddrflEIWNLVFmQfNReskeDdGtlkpL
                    +             +                     Re+   dG+l  L
   mKIAA1270     2 -H-------------Y---------------------REA---DGSLQLL 13   

                   PkksiDTGMGLERlvaVLQnvrsNYdtDlFrplIeaieeisgvRYDpYsG
                   P+ ++DTGMGLERlvaVLQ++rs YdtDlF pl +ai++ +g+   pYsG
   mKIAA1270    14 PQRHVDTGMGLERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAP--PYSG 61   

                   kvGdedkdetdeayRVIADHvRalaFaiADGvlPsNeGRGYVLRRILRRA
                    vG+ d++++d+ayRV+ADH+R+l+  iADGv+P+  G+  VLRRILRRA
   mKIAA1270    62 RVGAADEGRIDTAYRVVADHIRTLSVCIADGVSPGMSGAPLVLRRILRRA 111  

                   vRhgrkkLGlkepNFlykLVptvveimgdaYPELkekedfieeilelEEe
                   vR+  + L+++++ Fl++LVp+vve +g+aYPEL ++   i   + + E+
   mKIAA1270   112 VRYSTEVLQAPPG-FLGSLVPVVVETLGSAYPELEKNSVKIASLVSEDEA 160  

                   rFlkTLerGlrLleelikslkkkGsktLsGedaFkLYDT..YGFPvDLTq
                   +Fl  L+rG+r+ ++++k l +  s+ ++ e+a+ L  +++ G+P+DL++
   mKIAA1270   161 AFLASLQRGRRIIDRTVKRLGP--SDLFPAEVAWSLSLSgnLGIPLDLVE 208  

                   eiAeerGltVDmegFekamee.qrerskqakkgkgedlieldvsalkeld
                   +++ee+G + D  g e++ ++++++r+ q + + +ed + ldv+al+el+
   mKIAA1270   209 LMLEEKGVKLDTAGLEQLAQKeAQHRA-QQAEADQEDRLCLDVHALEELH 257  

                   atgvpgTteFlgYdtls.d.da.y.feeaeakilalfk.dgefveevlag
                     g+p+T+++++Y++    + ++y+f  +ea++l l+ + g  v++v ag
   mKIAA1270   258 RQGIPTTDDSPKYNY-TlHpNGdYeFGLCEARVLQLYSeTGTAVASVGAG 306  

                   qeggvvLDrTpFYAEsGGQigDtGylvyIngeg...gefrVedvqkyggg
                   q +g++LDrT+FYAE+GGQ  D+G   y+   g+++ +f V  +q  g g
   mKIAA1270   307 QRCGLLLDRTNFYAEQGGQASDRG---YLVRTGqqdMLFPVAGAQLCG-G 352  

                   vvvHigkveeGslkvGdtVtavvDedr<-*
                   +++H        l+vGd+V++ vD +r   
   mKIAA1270   353 FILHEAMAP-ERLQVGDQVQLYVD-KR    377  

tRNA_SAD: domain 1 of 1, from 472 to 530: score 40.9, E = 2.9e-08
                   *->vRvvsiGd.ll.npknkefsv...S.eLCgGTHVpnTgeIgaFKIls
                      vRvvs+G ++ ++++ ++    ++S eLC+GTH+ +Tg +g+ +I+ 
   mKIAA1270   472    VRVVSVGVpVAhALGPASQAAmhtSvELCCGTHLLSTGAVGDLVII- 517  

                   vAGAYWsgesknkglrRIy<-*
                         ++    kg++R+    
   mKIAA1270   518 ------GERQLVKGITRLL    530  

//