hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mic/mic34082/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1268  ( 1024 res)   mic34082

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
A1pp     Appr-1"-p processing enzyme                    323.7    1.3e-92   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
A1pp       1/3      21   155 ..     1   156 []   150.3    2e-40
A1pp       2/3     233   367 ..     1   156 []    94.1  1.6e-23
A1pp       3/3     446   565 ..     1   156 []    80.8  1.7e-19

Alignments of top-scoring domains:
A1pp: domain 1 of 3, from 21 to 155: score 150.3, E = 2e-40
                   *->ilkvvkGDItklradaIVNAANsrllhGgGgvagAiaraaggpcwee
                      +l v   D+++ ++d++VNAAN++l+h +G +a A+++aag p+++ 
   mKIAA1268    21    KLFVLEEDLSRFPVDVVVNAANENLKHISG-LAQALSKAAG-PELQT 65   

                   ekeefrkqaggepLqlgecpvGtavvteggnlpentkrgkakyVIHavGP
                   e++ ++k+ g       ++ +G+av++++g+l       ++++VIHavGP
   mKIAA1268    66 ECDQIVKEGG-------VVLPGNAVISKAGKL-------PCHHVIHAVGP 101  

                   easgynnkkgseegdellenAyranclrlaeelgiksvaiPlIstGiygv
                   ++ g++      e+ +ll++++r ++l laee++++s+a+P+ s+Gi+ +
   mKIAA1268   102 RWKGDKV----LECVSLLKKVVR-QSLSLAEEHRCRSIAMPAVSAGIFDF 146  

                   pkdrvaqal<-*
                   p++ ++  +   
   mKIAA1268   147 PLELCVANI    155  

A1pp: domain 2 of 3, from 233 to 367: score 94.1, E = 1.6e-23
                   *->ilkvvkGDItklradaIVNAANsrllhGgGgvagAiaraaggpcwee
                      ++++v   + ++ + aIVN+  ++l++ +G+++ A+ ++ag    ++
   mKIAA1268   233    RIRLVEEGVQNATTHAIVNSISPDLKLNKGPLSQAFLEKAG----PK 275  

                   ekeefrkqaggepLqlgecpvGtavvteggnlpentkrgkakyVIHavGP
                   ++ee+    +g      +++vGt   t+g+nl         ++V+H+v P
   mKIAA1268   276 LQEELTRSGQG-----VSVDVGTILQTSGCNL-------NSRHVFHVVPP 313  

                   easgynnkkgseegdellenAyranclrlaeelgiksvaiPlIstGiygv
                   ++ +    ++s  ++++++n +r+ cl+ +e+l + s+a+P+I+tG+  +
   mKIAA1268   314 PWKS----NNSAWSLKIMKNIIRD-CLKTTENLSLQSIAFPAIGTGNLRF 358  

                   pkdrvaqal<-*
                   pk ++a+++   
   mKIAA1268   359 PKPEFAKLI    367  

A1pp: domain 3 of 3, from 446 to 565: score 80.8, E = 1.7e-19
                   *->ilkvvkGDItklradaIVNAANsrllhGgGgvagAiaraaggpcwee
                       ++v  G+I+k  ad+IVN++   + +++G v++Ai + ag    ++
   mKIAA1268   446    LFQVATGNIIKEVADVIVNSTTLTFDLKSG-VSKAILEGAG----QN 487  

                   ekeefrkqaggepLqlgecpvGtavvteggnlpentkrgkakyVIHavGP
                    + e+  +a+          +    +++gg+l+       +k++IH+vG 
   mKIAA1268   488 VEQECSLLAK---------QSNHGYIVTGGGLL------QCKNIIHVVGG 522  

                   easgynnkkgseegdellenAyranclrlaeelgiksvaiPlIstGiygv
                   +              ++  +++++    ++e +++ s+++P+I+tG+++ 
   mKIAA1268   523 NDV------------KKSVSCVLE----ECEQRNYSSICLPAIGTGNAQQ 556  

                   pkdrvaqal<-*
                   +++ va+a+   
   mKIAA1268   557 DPNVVAKAI    565  

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