hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj02768/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1266  ( 522 res)   mpj02768

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BAH      Bromo adjacent homology domain                 116.0    4.1e-30   1
ZnF_GATA zinc finger binding to DNA consensus sequenc    48.9    6.6e-10   1
SANT     SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding d    41.2    1.4e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BAH        1/1      12   155 ..     1   163 []   116.0  4.1e-30
SANT       1/1     275   324 ..     1    53 []    41.2  1.4e-07
ZnF_GATA   1/1     383   425 ..     1    42 []    48.9  6.6e-10

Alignments of top-scoring domains:
BAH: domain 1 of 1, from 12 to 155: score 116.0, E = 4.1e-30
                   *->etisvGDfVlvepddfknreeKagrnvgdepyyvarIeeifetkkgk
                      ++++vGD+V++e+++             ++py + rIee+++t++g+
   mKIAA1266    12    NMYRVGDYVYFENSS-------------SNPYLIRRIEELNKTASGN 45   

                   kskkvrvrwfyRPedtvlgkarllerepr...........l.kd......
                     ++++v +fyR +d++      + ++++ ++++++++++++ d +++++
   mKIAA1266    46 --VEAKVVCFYRRRDISNTL--IMLADKHaketeeesetpVeADltekqk 91   

                   yafdknEvflsecPceddvpledIigkCnVlklsdyeklrpeesnsdakl
                   ++  ++E+fls +  ++ +p+ +I+gkC+V+ l++ e++  +        
   mKIAA1266    92 HQLKHRELFLSRQ--YESLPATHIRGKCSVALLNETESVLSYL------- 132  

                   erakaEERKkkgeedvFfcellYdptkgsFkklp<-*
                              + ed+Ff+ l+Ydp+ +++  ++   
   mKIAA1266   133 -----------DKEDTFFYSLVYDPSVKTLLADK    155  

SANT: domain 1 of 1, from 275 to 324: score 41.2, E = 1.4e-07
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelp.gRtpkqcrer
                      + +eW++ E  l++ea++kyG    +d++ I + + + ++  +++e+
   mKIAA1266   275    EMEEWSASEACLFEEALEKYG----KDFNDIRQDFLpWKSLTSIIEY 317  

                   wrnllkp<-*
                   +++++ +   
   mKIAA1266   318 YYMWKTT    324  

ZnF_GATA: domain 1 of 1, from 383 to 425: score 48.9, E = 6.6e-10
                   *->egrvCsnCgtttTplWR.wrgpeGnktLCNACGLyyKlhgvkr<-*
                       gr+C++C+ t++ +W++w +p++++ LC  C+Ly+K++g  +   
   mKIAA1266   383    LGRACESCYATQSHQWYsWGPPNMQCRLCATCWLYWKKYGGLK    425  

//