hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj02768/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1266  ( 522 res)   mpj02768

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
ELM2            ELM2 domain                             100.1    4.4e-26   1
BAH             BAH domain                               86.1      7e-22   1
Myb_DNA-binding Myb-like DNA-binding domain              39.3      9e-08   1
GATA            GATA zinc finger                         34.2    2.9e-06   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
BAH               1/1      12   155 ..     1   158 []    86.1    7e-22
ELM2              1/1     156   217 ..     1    81 []   100.1  4.4e-26
Myb_DNA-binding   1/1     276   322 ..     1    65 []    39.3    9e-08
GATA              1/1     387   424 ..     1    36 []    34.2  2.9e-06

Alignments of top-scoring domains:
BAH: domain 1 of 1, from 12 to 155: score 86.1, E = 7e-22
                   *->etysvGDfVlvepddpknleetKagrnvalepyyvarIeeivelfed
                      ++y+vGD+V++e+ +              ++py + rIee+    ++
   mKIAA1266    12    NMYRVGDYVYFENSS--------------SNPYLIRRIEEL---NKT 41   

                   sdgskskmlhvrwf............................yRPeetPy
                   ++g+  ++++v  f ++++ +++     +++ +++++++++++  + t  
   mKIAA1266    42 ASGN--VEAKVVCFyrrrdisntlimladkhaketeeesetpVEADLT-- 87   

                   ikslgrafnkDirEVflsdecddvplediigkCeVlkksdpeslqpeein
                    +  ++  ++  rE+fls++++ +p+ +i+gkC+V  +++ es   +   
   mKIAA1266    88 -EKQKHQLKH--RELFLSRQYESLPATHIRGKCSVALLNETESVLSYL-- 132  

                   idAdkldrarAERKkkgeedvFfCellYdpekgsFkklp<-*
                                   + ed+Ff+ l+Ydp+ +++  ++   
   mKIAA1266   133 ----------------DKEDTFFYSLVYDPSVKTLLADK    155  

ELM2: domain 1 of 1, from 156 to 217: score 100.1, E = 4.4e-26
                   *->geIrVGskyQAdvPefCRlpeterdeseeredLTkkedeekldelvW
                      geIrVG+kyQAd+P++  lpe+ +de+e++++          +++vW
   mKIAA1266   156    GEIRVGPKYQADIPDM--LPEGDSDEREQSKL----------EVKVW 190  

                   sPeDsqnqlddekidqylrlarslkkslgtfara<-*
                   +P+   ++l+d++idq+l++ar     +gtfara   
   mKIAA1266   191 DPN---SPLTDRQIDQFLVVARA----VGTFARA    217  

Myb_DNA-binding: domain 1 of 1, from 276 to 322: score 39.3, E = 9e-08
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      +++W+a E  l++ea+ek+Gk+           ++ I + +      
   mKIAA1266   276    MEEWSASEACLFEEALEKYGKD-----------FNDIRQDF------ 305  

                   nvlgrtaeqcklryykyk<-*
                    ++ ++  +++++yy++k   
   mKIAA1266   306 -LPWKSLTSIIEYYYMWK    322  

GATA: domain 1 of 1, from 387 to 424: score 34.2, E = 2.9e-06
                   *->CsnCgttkTplWRrgp..dGnrtLCNACGLyykkhgvk<-*
                      C++C +t++ +W +++++++++ LC  C+Ly+kk+g +   
   mKIAA1266   387    CESCYATQSHQWYSWGppNMQCRLCATCWLYWKKYGGL    424  

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