hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02708/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1265  ( 661 res)   mbh02708

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Zip      ZIP Zinc transporter                           441.3   8.2e-129   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Zip        1/1     234   649 ..     1   381 []   441.3 8.2e-129

Alignments of top-scoring domains:
Zip: domain 1 of 1, from 234 to 649: score 441.3, E = 8.2e-129
                   *->lllkiyaifalliisllggllplllplikstttendlrrsskllsfl
                       +++i++i+++++isll++l+++l+p i+        +++++ll+fl
   mKIAA1265   234    ASAWICGIISITVISLLSLLGVILVPIINQ-------GCFKFLLTFL 273  

                   laFAaGvlLgtaflHLLPealeal...ghkhshhhhhesseeledspsge
                   +a+A+G++ g+a+lHLLP++++++++++++ ++h+h++ +e +e + + +
   mKIAA1265   274 VALAVGTMSGDALLHLLPHSQGGHdhsHQHTHGHGHSHGHESKEFLEEYD 323  

                   fpfagllvllGfllfllvEklltllkge......................
                    +++gl++l+G++l++++E++++++k++++++++++   ++++++++ ++
   mKIAA1265   324 AVLKGLVALGGIYLLFIIEHCIRMFKHYkqqrgkqkwfmkqsteestigr 373  

                   ..................................................
                   + ++++ +++++ +  + ++  +++++  ++++ ++++ ++ + ++++++
   mKIAA1265   374 klsdhklnstpdadwlqlkplagtddsvvsedrlneteltdleaqqespp 423  

                   ..pcveskggghghshgeelssaetgespessheeaaedveal.eseves
                   +++ +++++    hsh+++l++ +++e + +sh +++ed+ +l+++ +++
   mKIAA1265   424 knYLGVEEEKIMDHSHSDGLHTIHEHEVHVTSHNHHDEDKAVLrKHSHQW 473  

                   skekhedshelehv.ld.ksksteeeskdknahghchHghhvsnvrsvql
                   ++ + ++sh+++h++ d k+++                            
   mKIAA1265   474 HHRHAHHSHGPCHSgSDlKETGI--------------------------- 496  

                   ryrliawllllglilHnffdGLAiGasfssstilGislfiAvlfHelphg
                       iaw++++g+++Hnf dGLAiGa+fs++ + Gis++iAv++Helph+
   mKIAA1265   497 --ANIAWMVIMGDGIHNFSDGLAIGAAFSAGLTGGISTSIAVFCHELPHE 544  

                   lGlgaiLlqagfsrkkAvPwllqllfalttpiGiaiGigisrtsydsnsp
                   lG++a+Ll+ag+++k+A+  +++ll+a++++iG++iG+++        + 
   mKIAA1265   545 LGDFAVLLKAGMTVKQAI--VYNLLSAMMAYIGMLIGTAV--------GQ 584  

                   gadivsgillafsAGtflYvAlvellPeelasseenet.gssslklsllq
                   +a++++ +++a++AG+flYvAlv++lPe+l+++   e++g++ +++++lq
   mKIAA1265   585 YANNITLWIFAITAGMFLYVALVDMLPEMLHGDGDHEEhGFCPVGQFILQ 634  

                   llalllGfalMalia<-*
                   +l+ll+Gfa+M++ia   
   mKIAA1265   635 NLGLLFGFAIMLVIA    649  

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