hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj34130/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1261  ( 729 res)   mfj34130

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   155.9    4.2e-42   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7     433   470 ..     1    46 []    22.2    0.074
WD40       2/7     476   517 ..     1    46 []    22.4    0.062
WD40       3/7     522   561 ..     1    46 []    30.9  0.00017
WD40       4/7     564   603 ..     1    46 []    44.0    2e-08
WD40       5/7     606   644 ..     1    46 []     6.9       40
WD40       6/7     646   685 ..     1    46 []    24.7    0.012
WD40       7/7     686   726 ..     1    46 []    17.9     0.71

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 433 to 470: score 22.2, E = 0.074
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd
                        +++ tl+ H     V++v++s         +++++g+ g++++Wd
   mKIAA1261   433    HaRQINTLN-HGE--VVCAVTISNPT------RHVYTGGKGCVKVWD 470  

                   <-*
                      
   mKIAA1261     -     -    

WD40: domain 2 of 7, from 476 to 517: score 22.4, E = 0.062
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs.Dgtir
                      ++++++ l+    ++  +++s++  pdg      + l++g++ +t+ 
   mKIAA1261   476    NkSPVSQLDclNRDN--YIRSCRLLPDG------RTLIVGGeASTLS 514  

                   lWd<-*
                   +Wd   
   mKIAA1261   515 IWD    517  

WD40: domain 3 of 7, from 522 to 561: score 30.9, E = 0.00017
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++  ++l+      +++++a+spd+      ++ +s+++Dg+i +W
   mKIAA1261   522    TpRIKAELTSSAP--ACYALAISPDS------KVCFSCCsDGNIAVW 560  

                   d<-*
                   d   
   mKIAA1261   561 D    561  

WD40: domain 4 of 7, from 564 to 603: score 44.0, E = 2e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++l+r ++gHt+  + +++++s dg      + l +g+ D+t+r W
   mKIAA1261   564    NqTLVRQFQGHTD--GASCIDISNDG------TKLWTGGlDNTVRSW 602  

                   d<-*
                   d   
   mKIAA1261   603 D    603  

WD40: domain 5 of 7, from 606 to 644: score 6.9, E = 40
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++l+  +  t+   + s+ ++p+g      ++la+g +++++ + 
   mKIAA1261   606    EgRQLQQHD-FTS--QIFSLGYCPTG------EWLAVGMeNSNVEVL 643  

                   d<-*
                   +   
   mKIAA1261   644 H    644  

WD40: domain 6 of 7, from 646 to 685: score 24.7, E = 0.012
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+   + l+ H++   V+s++f + g      ++++s ++D+ +  W
   mKIAA1261   646    TkPDKYQLHLHES--CVLSLKFAHCG------KWFVSTGkDNLLNAW 684  

                   d<-*
                       
   mKIAA1261   685 R    685  

WD40: domain 7 of 7, from 686 to 726: score 17.9, E = 0.71
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+   ++++  ++ s+V+s+++s d+      +++++gs+D++  ++
   mKIAA1261   686    TpYGASIFQSKES-SSVLSCDISVDD------KYIVTGSgDKKATVY 725  

                   d<-*
                   +   
   mKIAA1261   726 E    726  

//